ABK72370.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK72370.1

Hypothetical protein; Identified by Glimmer2; putative. (98 aa)

Predicted Functional Partners:

ABK73543.1

0.756

ABK73324.1

0.755

ABK71028.1

0.622

ABK75203.1

0.589

ABK75451.1

0.583

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK71028.1	ABK72370.1	MSMEG_5161	MSMEG_5157	Transmembrane transport protein; Identified by match to protein family HMM PF00474; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	Hypothetical protein; Identified by Glimmer2; putative.	0.622
ABK71028.1	ABK73324.1	MSMEG_5161	MSMEG_5158	Transmembrane transport protein; Identified by match to protein family HMM PF00474; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	Sensor histidine kinase; Identified by similarity to GB:AAB48182.1; match to protein family HMM PF02518; match to protein family HMM PF06580.	0.920
ABK71028.1	ABK73543.1	MSMEG_5161	MSMEG_5159	Transmembrane transport protein; Identified by match to protein family HMM PF00474; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	DNA-binding response regulator, putative; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.	0.922
ABK71028.1	ABK75203.1	MSMEG_5161	MSMEG_5160	Transmembrane transport protein; Identified by match to protein family HMM PF00474; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	Putative integral membrane protein.	0.957
ABK71028.1	ABK75451.1	MSMEG_5161	MSMEG_5156	Transmembrane transport protein; Identified by match to protein family HMM PF00474; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	Base excision DNA repair protein, HhH-GPD family protein; Identified by match to protein family HMM PF00730.	0.445
ABK72370.1	ABK71028.1	MSMEG_5157	MSMEG_5161	Hypothetical protein; Identified by Glimmer2; putative.	Transmembrane transport protein; Identified by match to protein family HMM PF00474; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.622
ABK72370.1	ABK73324.1	MSMEG_5157	MSMEG_5158	Hypothetical protein; Identified by Glimmer2; putative.	Sensor histidine kinase; Identified by similarity to GB:AAB48182.1; match to protein family HMM PF02518; match to protein family HMM PF06580.	0.755
ABK72370.1	ABK73543.1	MSMEG_5157	MSMEG_5159	Hypothetical protein; Identified by Glimmer2; putative.	DNA-binding response regulator, putative; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.	0.756
ABK72370.1	ABK75203.1	MSMEG_5157	MSMEG_5160	Hypothetical protein; Identified by Glimmer2; putative.	Putative integral membrane protein.	0.589
ABK72370.1	ABK75451.1	MSMEG_5157	MSMEG_5156	Hypothetical protein; Identified by Glimmer2; putative.	Base excision DNA repair protein, HhH-GPD family protein; Identified by match to protein family HMM PF00730.	0.583
ABK73324.1	ABK71028.1	MSMEG_5158	MSMEG_5161	Sensor histidine kinase; Identified by similarity to GB:AAB48182.1; match to protein family HMM PF02518; match to protein family HMM PF06580.	Transmembrane transport protein; Identified by match to protein family HMM PF00474; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.920
ABK73324.1	ABK72370.1	MSMEG_5158	MSMEG_5157	Sensor histidine kinase; Identified by similarity to GB:AAB48182.1; match to protein family HMM PF02518; match to protein family HMM PF06580.	Hypothetical protein; Identified by Glimmer2; putative.	0.755
ABK73324.1	ABK73543.1	MSMEG_5158	MSMEG_5159	Sensor histidine kinase; Identified by similarity to GB:AAB48182.1; match to protein family HMM PF02518; match to protein family HMM PF06580.	DNA-binding response regulator, putative; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.	0.981
ABK73324.1	ABK75203.1	MSMEG_5158	MSMEG_5160	Sensor histidine kinase; Identified by similarity to GB:AAB48182.1; match to protein family HMM PF02518; match to protein family HMM PF06580.	Putative integral membrane protein.	0.921
ABK73324.1	ABK75451.1	MSMEG_5158	MSMEG_5156	Sensor histidine kinase; Identified by similarity to GB:AAB48182.1; match to protein family HMM PF02518; match to protein family HMM PF06580.	Base excision DNA repair protein, HhH-GPD family protein; Identified by match to protein family HMM PF00730.	0.538
ABK73543.1	ABK71028.1	MSMEG_5159	MSMEG_5161	DNA-binding response regulator, putative; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.	Transmembrane transport protein; Identified by match to protein family HMM PF00474; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.922
ABK73543.1	ABK72370.1	MSMEG_5159	MSMEG_5157	DNA-binding response regulator, putative; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.	Hypothetical protein; Identified by Glimmer2; putative.	0.756
ABK73543.1	ABK73324.1	MSMEG_5159	MSMEG_5158	DNA-binding response regulator, putative; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.	Sensor histidine kinase; Identified by similarity to GB:AAB48182.1; match to protein family HMM PF02518; match to protein family HMM PF06580.	0.981
ABK73543.1	ABK75203.1	MSMEG_5159	MSMEG_5160	DNA-binding response regulator, putative; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.	Putative integral membrane protein.	0.926
ABK73543.1	ABK75451.1	MSMEG_5159	MSMEG_5156	DNA-binding response regulator, putative; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.	Base excision DNA repair protein, HhH-GPD family protein; Identified by match to protein family HMM PF00730.	0.543