STRINGSTRING
ABK71289.1 ABK71289.1 ABK70226.1 ABK70226.1 ABK72256.1 ABK72256.1 ychF ychF ABK75211.1 ABK75211.1 ABK74143.1 ABK74143.1 ABK71774.1 ABK71774.1 pks pks pks5 pks5 ABK70529.1 ABK70529.1 ABK70602.1 ABK70602.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK71289.1Esterase/lipase/thioesterase; Identified by match to protein family HMM PF07859. (315 aa)    
Predicted Functional Partners:
ABK70226.1
Alpha/beta hydrolase fold family protein; Identified by match to protein family HMM PF07859.
  
     0.647
ABK72256.1
GCN5-related N-acetyltransferase; Identified by match to protein family HMM PF00583.
  
    0.647
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
  
  
 0.647
ABK75211.1
Conserved hypothetical protein.
   
 0.589
ABK74143.1
Riboflavin biosynthesis protein RibD C- domain protein; Identified by match to protein family HMM PF01872.
  
    0.568
ABK71774.1
Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
  
 
 0.548
pks
Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.
  
 
 0.543
pks5
Mycocerosic acid synthase; Polyketide synthase involved in the biosynthesis of 2,4- dimethyl-2-eicosenoic acid, a lipid component of the lipooligosaccharides (LOS) which are not located at the bacterial surface but rather in deeper compartments of the cell envelope of M.smegmatis.
  
 
 0.512
ABK70529.1
Mycocerosic acid synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.
  
 
 0.503
ABK70602.1
Peptidase, S9A/B/C families; Identified by match to protein family HMM PF00326; match to protein family HMM PF07859.
  
    0.487
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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