Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK69833.1 | ABK72069.1 | MSMEG_0071 | MSMEG_5264 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.468 |
ABK69833.1 | ABK72094.1 | MSMEG_0071 | MSMEG_4548 | Conserved hypothetical protein. | Identified by match to protein family HMM PF00583. | 0.567 |
ABK69833.1 | ABK72725.1 | MSMEG_0071 | MSMEG_6932 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.550 |
ABK69833.1 | ABK73677.1 | MSMEG_0071 | MSMEG_5230 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.634 |
ABK69833.1 | ABK76080.1 | MSMEG_0071 | MSMEG_0068 | Conserved hypothetical protein. | Probable conserved transmembrane protein; Identified by match to protein family HMM PF04600; match to protein family HMM TIGR02958. | 0.779 |
ABK69833.1 | eccB1 | MSMEG_0071 | MSMEG_0060 | Conserved hypothetical protein. | Conserved hypothetical protein; An ATPase (shown for residues 72-479). Part of the ESX-1 / type VII specialized secretion system (T7SS), which exports several proteins including EsxA and EsxB. Plays a role in DNA conjugation, in both donor and recipient strains ; Belongs to the EccB family. | 0.822 |
ABK69833.1 | eccE1 | MSMEG_0071 | MSMEG_0082 | Conserved hypothetical protein. | Conserved hypothetical protein; Part of the ESX-1 / type VII specialized secretion system (T7SS), which exports several proteins including EsxA and EsxB. Plays a role in DNA conjugation, in at least a donor strain. | 0.785 |
ABK70321.1 | ABK72069.1 | MSMEG_2661 | MSMEG_5264 | Domain of unknown function (306) family protein; Identified by match to protein family HMM PF03724. | Conserved hypothetical protein. | 0.462 |
ABK70321.1 | ABK73677.1 | MSMEG_2661 | MSMEG_5230 | Domain of unknown function (306) family protein; Identified by match to protein family HMM PF03724. | Conserved hypothetical protein. | 0.598 |
ABK71858.1 | ABK73677.1 | MSMEG_5229 | MSMEG_5230 | Hypothetical protein; Identified by Glimmer2; putative. | Conserved hypothetical protein. | 0.896 |
ABK71858.1 | ABK75838.1 | MSMEG_5229 | MSMEG_5231 | Hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.665 |
ABK72069.1 | ABK69833.1 | MSMEG_5264 | MSMEG_0071 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.468 |
ABK72069.1 | ABK70321.1 | MSMEG_5264 | MSMEG_2661 | Conserved hypothetical protein. | Domain of unknown function (306) family protein; Identified by match to protein family HMM PF03724. | 0.462 |
ABK72069.1 | ABK72094.1 | MSMEG_5264 | MSMEG_4548 | Conserved hypothetical protein. | Identified by match to protein family HMM PF00583. | 0.636 |
ABK72069.1 | ABK73677.1 | MSMEG_5264 | MSMEG_5230 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.449 |
ABK72069.1 | eccE1 | MSMEG_5264 | MSMEG_0082 | Conserved hypothetical protein. | Conserved hypothetical protein; Part of the ESX-1 / type VII specialized secretion system (T7SS), which exports several proteins including EsxA and EsxB. Plays a role in DNA conjugation, in at least a donor strain. | 0.442 |
ABK72094.1 | ABK69833.1 | MSMEG_4548 | MSMEG_0071 | Identified by match to protein family HMM PF00583. | Conserved hypothetical protein. | 0.567 |
ABK72094.1 | ABK72069.1 | MSMEG_4548 | MSMEG_5264 | Identified by match to protein family HMM PF00583. | Conserved hypothetical protein. | 0.636 |
ABK72094.1 | ABK73677.1 | MSMEG_4548 | MSMEG_5230 | Identified by match to protein family HMM PF00583. | Conserved hypothetical protein. | 0.493 |
ABK72094.1 | ABK76080.1 | MSMEG_4548 | MSMEG_0068 | Identified by match to protein family HMM PF00583. | Probable conserved transmembrane protein; Identified by match to protein family HMM PF04600; match to protein family HMM TIGR02958. | 0.469 |
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