ABK70610.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK70610.1

GAF family protein; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730. (571 aa)

Predicted Functional Partners:

ABK74349.1

0.971

ABK70689.1

0.948

ABK75395.1

0.913

ABK70647.1

0.908

ABK70063.1

0.876

ABK75951.1

0.843

ABK74061.1

0.826

ABK70729.1

0.813

ABK74735.1

0.786

ABK74226.1

0.762

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70063.1	ABK70610.1	MSMEG_4969	MSMEG_5241	Two-component system response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04545.	GAF family protein; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730.	0.876
ABK70063.1	ABK70647.1	MSMEG_4969	MSMEG_0856	Two-component system response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04545.	DNA-binding response regulator, LuxR family protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	0.414
ABK70063.1	ABK74226.1	MSMEG_4969	MSMEG_5987	Two-component system response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04545.	Two-component regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	0.774
ABK70063.1	ABK75395.1	MSMEG_4969	MSMEG_3942	Two-component system response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04545.	Conserved hypothetical protein.	0.428
ABK70063.1	ABK75951.1	MSMEG_4969	MSMEG_6236	Two-component system response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04545.	Two-component system, regulatory protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	0.423
ABK70610.1	ABK70063.1	MSMEG_5241	MSMEG_4969	GAF family protein; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730.	Two-component system response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04545.	0.876
ABK70610.1	ABK70647.1	MSMEG_5241	MSMEG_0856	GAF family protein; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730.	DNA-binding response regulator, LuxR family protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	0.908
ABK70610.1	ABK70689.1	MSMEG_5241	MSMEG_3944	GAF family protein; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730.	Two component transcriptional regulatory protein devr; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	0.948
ABK70610.1	ABK70729.1	MSMEG_5241	MSMEG_1494	GAF family protein; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730.	Transcriptional regulatory protein DegU; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	0.813
ABK70610.1	ABK74061.1	MSMEG_5241	MSMEG_0105	GAF family protein; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730.	DNA-binding response regulator, LuxR family protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	0.826
ABK70610.1	ABK74226.1	MSMEG_5241	MSMEG_5987	GAF family protein; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730.	Two-component regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	0.762
ABK70610.1	ABK74349.1	MSMEG_5241	MSMEG_5244	GAF family protein; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730.	Two component transcriptional regulatory protein devr; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	0.971
ABK70610.1	ABK74735.1	MSMEG_5241	MSMEG_5246	GAF family protein; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730.	Conserved hypothetical protein.	0.786
ABK70610.1	ABK75395.1	MSMEG_5241	MSMEG_3942	GAF family protein; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730.	Conserved hypothetical protein.	0.913
ABK70610.1	ABK75951.1	MSMEG_5241	MSMEG_6236	GAF family protein; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730.	Two-component system, regulatory protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	0.843
ABK70647.1	ABK70063.1	MSMEG_0856	MSMEG_4969	DNA-binding response regulator, LuxR family protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	Two-component system response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04545.	0.414
ABK70647.1	ABK70610.1	MSMEG_0856	MSMEG_5241	DNA-binding response regulator, LuxR family protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	GAF family protein; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730.	0.908
ABK70647.1	ABK75395.1	MSMEG_0856	MSMEG_3942	DNA-binding response regulator, LuxR family protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	Conserved hypothetical protein.	0.435
ABK70689.1	ABK70610.1	MSMEG_3944	MSMEG_5241	Two component transcriptional regulatory protein devr; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	GAF family protein; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730.	0.948
ABK70689.1	ABK74349.1	MSMEG_3944	MSMEG_5244	Two component transcriptional regulatory protein devr; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	Two component transcriptional regulatory protein devr; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	0.904

page 1 of 3

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About