Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK69809.1 | ABK74528.1 | MSMEG_2681 | MSMEG_5285 | Proline imino-peptidase; Identified by match to protein family HMM PF00561; match to protein family HMM TIGR01250; Belongs to the peptidase S33 family. | Identified by match to protein family HMM PF01734. | 0.611 |
ABK71453.1 | ABK74528.1 | MSMEG_5287 | MSMEG_5285 | Dehydrogenase; Identified by match to protein family HMM PF00107. | Identified by match to protein family HMM PF01734. | 0.582 |
ABK73228.1 | ABK74528.1 | MSMEG_0682 | MSMEG_5285 | Conserved hypothetical protein, putative; Identified by match to protein family HMM PF07398; match to protein family HMM TIGR03083. | Identified by match to protein family HMM PF01734. | 0.471 |
ABK74528.1 | ABK69809.1 | MSMEG_5285 | MSMEG_2681 | Identified by match to protein family HMM PF01734. | Proline imino-peptidase; Identified by match to protein family HMM PF00561; match to protein family HMM TIGR01250; Belongs to the peptidase S33 family. | 0.611 |
ABK74528.1 | ABK71453.1 | MSMEG_5285 | MSMEG_5287 | Identified by match to protein family HMM PF01734. | Dehydrogenase; Identified by match to protein family HMM PF00107. | 0.582 |
ABK74528.1 | ABK73228.1 | MSMEG_5285 | MSMEG_0682 | Identified by match to protein family HMM PF01734. | Conserved hypothetical protein, putative; Identified by match to protein family HMM PF07398; match to protein family HMM TIGR03083. | 0.471 |
ABK74528.1 | ABK75805.1 | MSMEG_5285 | MSMEG_4203 | Identified by match to protein family HMM PF01734. | Peptidase S8 and S53, subtilisin, kexin, sedolisin; Identified by match to protein family HMM PF00082. | 0.822 |
ABK74528.1 | lipB | MSMEG_5285 | MSMEG_4285 | Identified by match to protein family HMM PF01734. | Lipoyltransferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate. | 0.553 |
ABK75805.1 | ABK74528.1 | MSMEG_4203 | MSMEG_5285 | Peptidase S8 and S53, subtilisin, kexin, sedolisin; Identified by match to protein family HMM PF00082. | Identified by match to protein family HMM PF01734. | 0.822 |
lipB | ABK74528.1 | MSMEG_4285 | MSMEG_5285 | Lipoyltransferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate. | Identified by match to protein family HMM PF01734. | 0.553 |