Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK70402.1 | ABK70726.1 | MSMEG_5389 | MSMEG_0284 | LysA protein. | Ribosyldihydronicotinamide dehydrogenase (quinone); Identified by match to protein family HMM PF02525. | 0.636 |
ABK70402.1 | ABK70957.1 | MSMEG_5389 | MSMEG_4729 | LysA protein. | Conserved hypothetical protein. | 0.613 |
ABK70402.1 | ABK73517.1 | MSMEG_5389 | MSMEG_4907 | LysA protein. | Identified by match to protein family HMM PF01398. | 0.605 |
ABK70402.1 | ABK75592.1 | MSMEG_5389 | MSMEG_5564 | LysA protein. | NAD(P)H dehydrogenase, quinone family protein; Identified by similarity to SP:P16083; match to protein family HMM PF02525. | 0.638 |
ABK70402.1 | dapF | MSMEG_5389 | MSMEG_2735 | LysA protein. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.655 |
ABK70402.1 | glpK | MSMEG_5389 | MSMEG_6229 | LysA protein. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.624 |
ABK70402.1 | glpK-2 | MSMEG_5389 | MSMEG_6756 | LysA protein. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.625 |
ABK70402.1 | glpK-3 | MSMEG_5389 | MSMEG_6759 | LysA protein. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.623 |
ABK70402.1 | lysA | MSMEG_5389 | MSMEG_4958 | LysA protein. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.819 |
ABK70402.1 | mpa | MSMEG_5389 | MSMEG_3902 | LysA protein. | ATPase, AAA family protein; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 0.617 |
ABK70726.1 | ABK70402.1 | MSMEG_0284 | MSMEG_5389 | Ribosyldihydronicotinamide dehydrogenase (quinone); Identified by match to protein family HMM PF02525. | LysA protein. | 0.636 |
ABK70726.1 | ABK75592.1 | MSMEG_0284 | MSMEG_5564 | Ribosyldihydronicotinamide dehydrogenase (quinone); Identified by match to protein family HMM PF02525. | NAD(P)H dehydrogenase, quinone family protein; Identified by similarity to SP:P16083; match to protein family HMM PF02525. | 0.911 |
ABK70726.1 | lysA | MSMEG_0284 | MSMEG_4958 | Ribosyldihydronicotinamide dehydrogenase (quinone); Identified by match to protein family HMM PF02525. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.631 |
ABK70957.1 | ABK70402.1 | MSMEG_4729 | MSMEG_5389 | Conserved hypothetical protein. | LysA protein. | 0.613 |
ABK73517.1 | ABK70402.1 | MSMEG_4907 | MSMEG_5389 | Identified by match to protein family HMM PF01398. | LysA protein. | 0.605 |
ABK73517.1 | glpK | MSMEG_4907 | MSMEG_6229 | Identified by match to protein family HMM PF01398. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.912 |
ABK73517.1 | glpK-2 | MSMEG_4907 | MSMEG_6756 | Identified by match to protein family HMM PF01398. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.912 |
ABK73517.1 | glpK-3 | MSMEG_4907 | MSMEG_6759 | Identified by match to protein family HMM PF01398. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.912 |
ABK73517.1 | lysA | MSMEG_4907 | MSMEG_4958 | Identified by match to protein family HMM PF01398. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.607 |
ABK73517.1 | mpa | MSMEG_4907 | MSMEG_3902 | Identified by match to protein family HMM PF01398. | ATPase, AAA family protein; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 0.990 |
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