ABK71623.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK71623.1

Integral membrane protein. (233 aa)

Predicted Functional Partners:

lgt

0.712

ABK72906.1

0.599

ABK72457.1

0.522

ABK71854.1

0.514

ABK75216.1

0.507

ABK72560.1

0.491

ABK75684.1

0.484

ABK76165.1

0.470

ABK72388.1

0.465

ABK71516.1

0.460

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK71516.1	ABK71623.1	MSMEG_2631	MSMEG_5407	Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797.	Integral membrane protein.	0.460
ABK71623.1	ABK71516.1	MSMEG_5407	MSMEG_2631	Integral membrane protein.	Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797.	0.460
ABK71623.1	ABK71854.1	MSMEG_5407	MSMEG_5739	Integral membrane protein.	Putative long-chain fatty-acid--CoA ligase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.514
ABK71623.1	ABK72388.1	MSMEG_5407	MSMEG_6554	Integral membrane protein.	Hypothetical ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00970; match to protein family HMM PF04954; match to protein family HMM PF08021.	0.465
ABK71623.1	ABK72457.1	MSMEG_5407	MSMEG_5406	Integral membrane protein.	Hypothetical protein; Identified by Glimmer2; putative.	0.522
ABK71623.1	ABK72560.1	MSMEG_5407	MSMEG_4768	Integral membrane protein.	Transcriptional regulator.	0.491
ABK71623.1	ABK72906.1	MSMEG_5407	MSMEG_0755	Integral membrane protein.	Cobalt-zinc-cadmium resistance protein; Identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297.	0.599
ABK71623.1	ABK75216.1	MSMEG_5407	MSMEG_6665	Integral membrane protein.	Integral membrane protein.	0.507
ABK71623.1	ABK75684.1	MSMEG_5407	MSMEG_2956	Integral membrane protein.	NAD dependent epimerase/dehydratase family protein; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.484
ABK71623.1	ABK76165.1	MSMEG_5407	MSMEG_1385	Integral membrane protein.	PAP2 superfamily protein; Identified by match to protein family HMM PF01569.	0.470
ABK71623.1	lgt	MSMEG_5407	MSMEG_5408	Integral membrane protein.	Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins.	0.712
ABK71854.1	ABK71623.1	MSMEG_5739	MSMEG_5407	Putative long-chain fatty-acid--CoA ligase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Integral membrane protein.	0.514
ABK71854.1	ABK72388.1	MSMEG_5739	MSMEG_6554	Putative long-chain fatty-acid--CoA ligase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Hypothetical ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00970; match to protein family HMM PF04954; match to protein family HMM PF08021.	0.702
ABK71854.1	ABK72906.1	MSMEG_5739	MSMEG_0755	Putative long-chain fatty-acid--CoA ligase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Cobalt-zinc-cadmium resistance protein; Identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297.	0.543
ABK71854.1	ABK75684.1	MSMEG_5739	MSMEG_2956	Putative long-chain fatty-acid--CoA ligase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	NAD dependent epimerase/dehydratase family protein; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.707
ABK72388.1	ABK71623.1	MSMEG_6554	MSMEG_5407	Hypothetical ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00970; match to protein family HMM PF04954; match to protein family HMM PF08021.	Integral membrane protein.	0.465
ABK72388.1	ABK71854.1	MSMEG_6554	MSMEG_5739	Hypothetical ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00970; match to protein family HMM PF04954; match to protein family HMM PF08021.	Putative long-chain fatty-acid--CoA ligase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.702
ABK72388.1	ABK75684.1	MSMEG_6554	MSMEG_2956	Hypothetical ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00970; match to protein family HMM PF04954; match to protein family HMM PF08021.	NAD dependent epimerase/dehydratase family protein; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.513
ABK72457.1	ABK71623.1	MSMEG_5406	MSMEG_5407	Hypothetical protein; Identified by Glimmer2; putative.	Integral membrane protein.	0.522
ABK72457.1	lgt	MSMEG_5406	MSMEG_5408	Hypothetical protein; Identified by Glimmer2; putative.	Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins.	0.471