STRINGSTRING
cheR cheR ABK69658.1 ABK69658.1 ABK73960.1 ABK73960.1 ABK75635.1 ABK75635.1 ABK76139.1 ABK76139.1 ABK72665.1 ABK72665.1 ruvB ruvB ABK73869.1 ABK73869.1 ABK72676.1 ABK72676.1 ABK69623.1 ABK69623.1 ABK70586.1 ABK70586.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cheRCheR methyltransferase, SAM binding domain protein; Identified by match to protein family HMM PF00989; match to protein family HMM PF01739; match to protein family HMM PF03705; match to protein family HMM TIGR00229. (616 aa)    
Predicted Functional Partners:
ABK69658.1
Two-component sensor protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF05227.
  
 0.965
ABK73960.1
Two-component system response regulator.
  
  
 0.892
ABK75635.1
Stas domain protein; Identified by match to protein family HMM PF01740.
 
  
 0.823
ABK76139.1
Pyruvate synthase; Identified by match to protein family HMM PF01855.
  
   0.774
ABK72665.1
RNA polymerase sigma-F factor; Identified by match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; match to protein family HMM TIGR02980; Belongs to the sigma-70 factor family.
  
  
 0.749
ruvB
Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
   
   0.720
ABK73869.1
Nitrate/nitrite response regulator protein; Identified by match to protein family HMM PF00072.
  
  
 0.718
ABK72676.1
Thioredoxin reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00072; match to protein family HMM PF01266; match to protein family HMM PF07992.
 
  
 0.661
ABK69623.1
Sensory box/response regulator; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00254.
    0.632
ABK70586.1
Two-component system response regulator; Identified by match to protein family HMM PF00072.
 
  
 0.559
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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