STRINGSTRING
ABK72446.1 ABK72446.1 ABK72624.1 ABK72624.1 ABK75592.1 ABK75592.1 ABK76117.1 ABK76117.1 ABK75155.1 ABK75155.1 ABK74301.1 ABK74301.1 ABK70120.1 ABK70120.1 ABK72373.1 ABK72373.1 lexA lexA ABK71788.1 ABK71788.1 ABK75267.1 ABK75267.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK72446.1AraC-family protein transcriptional regulator; Identified by match to protein family HMM PF00165; match to protein family HMM PF01965. (326 aa)    
Predicted Functional Partners:
ABK72624.1
Isonitrile hydratase, putative; Identified by match to protein family HMM PF01965.
 
    0.680
ABK75592.1
NAD(P)H dehydrogenase, quinone family protein; Identified by similarity to SP:P16083; match to protein family HMM PF02525.
 
  
 0.664
ABK76117.1
Probable transcriptional regulator, AraC family protein, putative; Identified by match to protein family HMM PF00165.
 
 
 0.618
ABK75155.1
Transcriptional regulator; Identified by match to protein family HMM PF00165.
 
 
 0.605
ABK74301.1
MmsAB operon regulatory protein; Identified by match to protein family HMM PF00165; match to protein family HMM PF02311.
 
 
 0.600
ABK70120.1
AraC-family protein transcriptional regulator; Identified by match to protein family HMM PF00165; match to protein family HMM PF02311.
 
 
 0.505
ABK72373.1
Putative transcriptional regulator; Identified by match to protein family HMM PF00165.
 
 
 0.500
lexA
LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
   
 
 0.500
ABK71788.1
Transcriptional regulatory protein; Identified by match to protein family HMM PF00165.
 
 
 0.473
ABK75267.1
Transcriptional regulator, AraC family protein; Identified by match to protein family HMM PF00165; match to protein family HMM PF02311.
 
 
 0.462
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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