Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK70987.1 | ABK75923.1 | MSMEG_0866 | MSMEG_5579 | DNA or RNA helicase of superfamily protein II; Identified by match to protein family HMM PF04851. | MarR-family protein transcriptional regulator; Identified by match to protein family HMM PF01022; match to protein family HMM PF01047. | 0.437 |
| ABK74526.1 | ABK75923.1 | MSMEG_5724 | MSMEG_5579 | Bacterial regulatory protein, MarR family protein; Identified by match to protein family HMM PF01047. | MarR-family protein transcriptional regulator; Identified by match to protein family HMM PF01022; match to protein family HMM PF01047. | 0.406 |
| ABK75190.1 | ABK75923.1 | MSMEG_5578 | MSMEG_5579 | Hypothetical protein; Identified by Glimmer2; putative. | MarR-family protein transcriptional regulator; Identified by match to protein family HMM PF01022; match to protein family HMM PF01047. | 0.602 |
| ABK75190.1 | ku | MSMEG_5578 | MSMEG_5580 | Hypothetical protein; Identified by Glimmer2; putative. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) repair enzyme which repairs blunt-end and 5'-overhang double strand breaks (DSB) with about 50% fidelity, and DSB with non-complementary 3' ends. Plays a partial role in NHEJ on 3'-overhang repair of complementary ends. NHEJ repairs DSB with blunt ends and 5' overhangs with a high level of nucleotide insertion/deletion, without a need for microhomology. This protein but not LigD also suppresses homologous recombination. Overexpression dramatically increases the efficiency of NHEJ with no effect on repair fidelity. | 0.413 |
| ABK75923.1 | ABK70987.1 | MSMEG_5579 | MSMEG_0866 | MarR-family protein transcriptional regulator; Identified by match to protein family HMM PF01022; match to protein family HMM PF01047. | DNA or RNA helicase of superfamily protein II; Identified by match to protein family HMM PF04851. | 0.437 |
| ABK75923.1 | ABK74526.1 | MSMEG_5579 | MSMEG_5724 | MarR-family protein transcriptional regulator; Identified by match to protein family HMM PF01022; match to protein family HMM PF01047. | Bacterial regulatory protein, MarR family protein; Identified by match to protein family HMM PF01047. | 0.406 |
| ABK75923.1 | ABK75190.1 | MSMEG_5579 | MSMEG_5578 | MarR-family protein transcriptional regulator; Identified by match to protein family HMM PF01022; match to protein family HMM PF01047. | Hypothetical protein; Identified by Glimmer2; putative. | 0.602 |
| ABK75923.1 | ku | MSMEG_5579 | MSMEG_5580 | MarR-family protein transcriptional regulator; Identified by match to protein family HMM PF01022; match to protein family HMM PF01047. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) repair enzyme which repairs blunt-end and 5'-overhang double strand breaks (DSB) with about 50% fidelity, and DSB with non-complementary 3' ends. Plays a partial role in NHEJ on 3'-overhang repair of complementary ends. NHEJ repairs DSB with blunt ends and 5' overhangs with a high level of nucleotide insertion/deletion, without a need for microhomology. This protein but not LigD also suppresses homologous recombination. Overexpression dramatically increases the efficiency of NHEJ with no effect on repair fidelity. | 0.526 |
| ku | ABK75190.1 | MSMEG_5580 | MSMEG_5578 | Ku protein; With LigD forms a non-homologous end joining (NHEJ) repair enzyme which repairs blunt-end and 5'-overhang double strand breaks (DSB) with about 50% fidelity, and DSB with non-complementary 3' ends. Plays a partial role in NHEJ on 3'-overhang repair of complementary ends. NHEJ repairs DSB with blunt ends and 5' overhangs with a high level of nucleotide insertion/deletion, without a need for microhomology. This protein but not LigD also suppresses homologous recombination. Overexpression dramatically increases the efficiency of NHEJ with no effect on repair fidelity. | Hypothetical protein; Identified by Glimmer2; putative. | 0.413 |
| ku | ABK75923.1 | MSMEG_5580 | MSMEG_5579 | Ku protein; With LigD forms a non-homologous end joining (NHEJ) repair enzyme which repairs blunt-end and 5'-overhang double strand breaks (DSB) with about 50% fidelity, and DSB with non-complementary 3' ends. Plays a partial role in NHEJ on 3'-overhang repair of complementary ends. NHEJ repairs DSB with blunt ends and 5' overhangs with a high level of nucleotide insertion/deletion, without a need for microhomology. This protein but not LigD also suppresses homologous recombination. Overexpression dramatically increases the efficiency of NHEJ with no effect on repair fidelity. | MarR-family protein transcriptional regulator; Identified by match to protein family HMM PF01022; match to protein family HMM PF01047. | 0.526 |