STRINGSTRING
ABK74872.1 ABK74872.1 ABK70123.1 ABK70123.1 ABK69612.1 ABK69612.1 ABK73975.1 ABK73975.1 ctpE ctpE accD accD ABK72694.1 ABK72694.1 ABK72974.1 ABK72974.1 ABK71774.1 ABK71774.1 ABK70717.1 ABK70717.1 pks pks
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK74872.1feruloyl-CoA synthetase; Identified by match to protein family HMM PF00501. (490 aa)    
Predicted Functional Partners:
ABK70123.1
AMP-dependent synthetase and ligase; Identified by match to protein family HMM PF00501.
 
   
0.926
ABK69612.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106.
  
 
 0.912
ABK73975.1
Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07702.
 
    0.874
ctpE
P-type ATPase - metal cation transport; P-type ATPase involved in specific uptake of calcium. Essential for growth and maintenance of cell surface integrity under Ca(2+)-deficient conditions.
  
 
 0.853
accD
acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Identified by match to protein family HMM PF01039.
  
  
 0.836
ABK72694.1
Identified by match to protein family HMM PF00144.
  
  
 0.824
ABK72974.1
Conserved hypothetical protein.
  
    0.776
ABK71774.1
Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
 
 0.734
ABK70717.1
Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF02801; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 0.713
pks
Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.
 
 0.707
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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