STRINGSTRING
ABK72315.1 ABK72315.1 ABK74036.1 ABK74036.1 ABK73150.1 ABK73150.1 ABK69842.1 ABK69842.1 pks pks ABK74091.1 ABK74091.1 ABK71828.1 ABK71828.1 ABK76069.1 ABK76069.1 ABK71619.1 ABK71619.1 ABK70561.1 ABK70561.1 pks5 pks5
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK72315.1Epoxide hydrolase; Identified by match to protein family HMM PF00561; match to protein family HMM PF06441. (370 aa)    
Predicted Functional Partners:
ABK74036.1
Epoxide hydrolase 1; Identified by match to protein family HMM PF00561; match to protein family HMM PF06441.
  
 
 
0.905
ABK73150.1
Transcriptional regulator, LysR family protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
    0.581
ABK69842.1
Alpha/beta hydrolase; Identified by match to protein family HMM PF00561.
  
 0.497
pks
Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.
  
 
 0.484
ABK74091.1
Peptidase S1 and S6, chymotrypsin/Hap; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595.
  
 0.452
ABK71828.1
Trypsin; Identified by match to protein family HMM PF00089.
  
 0.451
ABK76069.1
Hypothetical protein; Identified by Glimmer2; putative.
   
 0.445
ABK71619.1
Serine protease; Identified by match to protein family HMM PF00089; match to protein family HMM PF02674.
   
 0.445
ABK70561.1
Trypsin; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595.
   
 0.445
pks5
Mycocerosic acid synthase; Polyketide synthase involved in the biosynthesis of 2,4- dimethyl-2-eicosenoic acid, a lipid component of the lipooligosaccharides (LOS) which are not located at the bacterial surface but rather in deeper compartments of the cell envelope of M.smegmatis.
  
 
 0.442
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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