STRINGSTRING
ABK71798.1 ABK71798.1 ABK69864.1 ABK69864.1 serC serC ABK71067.1 ABK71067.1 ABK75380.1 ABK75380.1 ABK70951.1 ABK70951.1 pcaC pcaC ABK70103.1 ABK70103.1 ABK74361.1 ABK74361.1 ABK73105.1 ABK73105.1 aftD aftD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK71798.1Conserved hypothetical protein. (325 aa)    
Predicted Functional Partners:
ABK69864.1
Probable ferredoxin/ferredoxin--NADP reductase; Identified by match to protein family HMM PF00037; match to protein family HMM PF07992.
 
  
 0.981
serC
Phosphoserine aminotransferase, putative; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
  
  
 0.834
ABK71067.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.
 
  
 0.712
ABK75380.1
Probable conserved transmembrane protein.
  
     0.675
ABK70951.1
Conserved hypothetical protein; Identified by match to protein family HMM PF07848; match to protein family HMM PF08223.
 
  
 0.620
pcaC
4-carboxymuconolactone decarboxylase domain protein; Identified by match to protein family HMM PF02627.
  
   
 0.535
ABK70103.1
Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.
 
  
 0.535
ABK74361.1
NADH:flavin oxidoreductase/nadh oxidase.
  
    0.532
ABK73105.1
Conserved hypothetical protein.
  
   
 0.529
aftD
Conserved hypothetical protein; Involved in the biosynthesis of the arabinogalactan (AG) region of the mycolylarabinogalactan-peptidoglycan (mAGP) complex, an essential component of the mycobacterial cell wall. Catalyzes the addition of an arabinofuranosyl (Araf) residue from the sugar donor decaprenyl-phospho-arabinose (DPA) on the C-3 of an alpha-(1->5)-linked Araf from the arabinan backbone of AG.
  
     0.528
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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