STRINGSTRING
ABK75806.1 ABK75806.1 ABK73397.1 ABK73397.1 ABK73539.1 ABK73539.1 ABK69822.1 ABK69822.1 ABK73778.1 ABK73778.1 ABK73029.1 ABK73029.1 ABK72219.1 ABK72219.1 ABK73676.1 ABK73676.1 ABK71454.1 ABK71454.1 rbpA rbpA ABK76208.1 ABK76208.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK75806.1Conserved hypothetical protein. (261 aa)    
Predicted Functional Partners:
ABK73397.1
Conserved hypothetical protein.
 
    0.868
ABK73539.1
Transporter, major facilitator family protein; Identified by match to protein family HMM PF07690.
  
    0.804
ABK69822.1
Conserved hypothetical protein.
  
    0.776
ABK73778.1
Conserved hypothetical protein.
  
    0.669
ABK73029.1
Identified by match to protein family HMM PF00580; Belongs to the helicase family. UvrD subfamily.
  
    0.658
ABK72219.1
Conserved hypothetical protein.
  
    0.656
ABK73676.1
Conserved hypothetical protein.
  
    0.604
ABK71454.1
Two-component system response regulator.
 
    0.564
rbpA
Conserved hypothetical protein; Binds to RNA polymerase (RNAP), probably stimulating transcriptions from principal, but not alternative sigma factor promoters (By similarity). Partially restores transcription in the presence of rifampicin (Rif) in vitro; overexpression leads to an increase in the Rif tolerance in vivo, with smaller colonies. Seems to act by removing Rif from its binding site and preventing its further binding. No longer stimulates transcription in Rif-resistant RNA polymerase (with mutations in rpoB).
  
    0.552
ABK76208.1
Lsr2 protein.
  
    0.531
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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