Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK70368.1 | ABK71299.1 | MSMEG_5696 | MSMEG_5695 | Cold-shock' DNA-binding domain protein; Identified by match to protein family HMM PF00313. | Glutathione S-transferase. | 0.837 |
| ABK70368.1 | ABK71608.1 | MSMEG_5696 | MSMEG_1930 | Cold-shock' DNA-binding domain protein; Identified by match to protein family HMM PF00313. | DEAD/DEAH box helicase; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; Belongs to the DEAD box helicase family. | 0.637 |
| ABK70368.1 | ABK71789.1 | MSMEG_5696 | MSMEG_6330 | Cold-shock' DNA-binding domain protein; Identified by match to protein family HMM PF00313. | Prephenate dehydrogenase; Identified by match to protein family HMM PF02153. | 0.671 |
| ABK70368.1 | ABK74899.1 | MSMEG_5696 | MSMEG_5697 | Cold-shock' DNA-binding domain protein; Identified by match to protein family HMM PF00313. | Integral membrane protein; Identified by match to protein family HMM PF03733. | 0.788 |
| ABK70368.1 | deaD | MSMEG_5696 | MSMEG_5042 | Cold-shock' DNA-binding domain protein; Identified by match to protein family HMM PF00313. | ATP-dependent rna helicase, dead/deah box family protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 0.744 |
| ABK70368.1 | moaA | MSMEG_5696 | MSMEG_5698 | Cold-shock' DNA-binding domain protein; Identified by match to protein family HMM PF00313. | Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate. | 0.693 |
| ABK70368.1 | rpoA | MSMEG_5696 | MSMEG_1524 | Cold-shock' DNA-binding domain protein; Identified by match to protein family HMM PF00313. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.668 |
| ABK70368.1 | rpoB | MSMEG_5696 | MSMEG_1367 | Cold-shock' DNA-binding domain protein; Identified by match to protein family HMM PF00313. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. This subunit often mutates to generate rifampicin (Rif) resistance. Interaction with RbpA partially restores Rif-inhibited transcription; once the subunit is Rif-resistant however RbpA no longer stimulates transcription. | 0.676 |
| ABK70368.1 | rpoZ | MSMEG_5696 | MSMEG_3053 | Cold-shock' DNA-binding domain protein; Identified by match to protein family HMM PF00313. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.734 |
| ABK70368.1 | rpsO | MSMEG_5696 | MSMEG_2654 | Cold-shock' DNA-binding domain protein; Identified by match to protein family HMM PF00313. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.661 |
| ABK71299.1 | ABK70368.1 | MSMEG_5695 | MSMEG_5696 | Glutathione S-transferase. | Cold-shock' DNA-binding domain protein; Identified by match to protein family HMM PF00313. | 0.837 |
| ABK71299.1 | ABK74899.1 | MSMEG_5695 | MSMEG_5697 | Glutathione S-transferase. | Integral membrane protein; Identified by match to protein family HMM PF03733. | 0.651 |
| ABK71299.1 | moaA | MSMEG_5695 | MSMEG_5698 | Glutathione S-transferase. | Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate. | 0.587 |
| ABK71608.1 | ABK70368.1 | MSMEG_1930 | MSMEG_5696 | DEAD/DEAH box helicase; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; Belongs to the DEAD box helicase family. | Cold-shock' DNA-binding domain protein; Identified by match to protein family HMM PF00313. | 0.637 |
| ABK71608.1 | rpoA | MSMEG_1930 | MSMEG_1524 | DEAD/DEAH box helicase; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; Belongs to the DEAD box helicase family. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.798 |
| ABK71608.1 | rpoB | MSMEG_1930 | MSMEG_1367 | DEAD/DEAH box helicase; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; Belongs to the DEAD box helicase family. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. This subunit often mutates to generate rifampicin (Rif) resistance. Interaction with RbpA partially restores Rif-inhibited transcription; once the subunit is Rif-resistant however RbpA no longer stimulates transcription. | 0.802 |
| ABK71608.1 | rpoZ | MSMEG_1930 | MSMEG_3053 | DEAD/DEAH box helicase; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; Belongs to the DEAD box helicase family. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.696 |
| ABK71608.1 | rpsO | MSMEG_1930 | MSMEG_2654 | DEAD/DEAH box helicase; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; Belongs to the DEAD box helicase family. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.736 |
| ABK71789.1 | ABK70368.1 | MSMEG_6330 | MSMEG_5696 | Prephenate dehydrogenase; Identified by match to protein family HMM PF02153. | Cold-shock' DNA-binding domain protein; Identified by match to protein family HMM PF00313. | 0.671 |
| ABK71789.1 | rpoA | MSMEG_6330 | MSMEG_1524 | Prephenate dehydrogenase; Identified by match to protein family HMM PF02153. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.405 |
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