STRINGSTRING
ABK74176.1 ABK74176.1 ABK75281.1 ABK75281.1 ABK70593.1 ABK70593.1 ABK69711.1 ABK69711.1 ABK76225.1 ABK76225.1 ABK69560.1 ABK69560.1 ABK73474.1 ABK73474.1 ABK73581.1 ABK73581.1 ABK71774.1 ABK71774.1 pks pks ABK70529.1 ABK70529.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK74176.1Zinc-binding oxidoreductase; Identified by match to protein family HMM PF00107. (307 aa)    
Predicted Functional Partners:
ABK75281.1
Cupin domain protein; Identified by match to protein family HMM PF07883.
 
  
 0.853
ABK70593.1
Conserved hypothetical protein.
 
   0.844
ABK69711.1
Putative cyanamide hydratase; Identified by match to protein family HMM PF01966.
  
    0.768
ABK76225.1
trans-2-enoyl-CoA reductase; Identified by match to protein family HMM PF00107.
  
    0.641
ABK69560.1
GntR-family protein regulator; Identified by match to protein family HMM PF00155; match to protein family HMM PF00392.
  
 
 0.626
ABK73474.1
Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368.
 
 
 0.526
ABK73581.1
Identified by match to protein family HMM PF01113; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368.
 
 
 0.476
ABK71774.1
Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
  
 
 0.460
pks
Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.
  
 
0.456
ABK70529.1
Mycocerosic acid synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.
  
 
 0.456
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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