ABK70858.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK70858.1

Globin; Identified by match to protein family HMM PF01152. (121 aa)

Predicted Functional Partners:

ABK72717.1

0.804

ABK69618.1

0.696

hydA-3

0.673

hydA-2

0.672

ABK72663.1

0.656

ggt

0.631

ABK69527.1

0.614

hydA

0.606

ABK74843.1

0.590

ABK74496.1

0.575

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK69527.1	ABK69618.1	MSMEG_0428	MSMEG_4008	Nitrite reductase [NAD(P)H] small subunit.	Oxidoreductase, 2OG-Fe(II) oxygenase family protein; Identified by match to protein family HMM PF03171; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.589
ABK69527.1	ABK70858.1	MSMEG_0428	MSMEG_5765	Nitrite reductase [NAD(P)H] small subunit.	Globin; Identified by match to protein family HMM PF01152.	0.614
ABK69527.1	ABK74496.1	MSMEG_0428	MSMEG_0432	Nitrite reductase [NAD(P)H] small subunit.	uroporphyrinogen-III synthetase; Identified by match to protein family HMM PF00486; match to protein family HMM PF02602.	0.757
ABK69527.1	ABK74843.1	MSMEG_0428	MSMEG_5360	Nitrite reductase [NAD(P)H] small subunit.	Formate/nitrate transporter; Identified by match to protein family HMM PF01226.	0.766
ABK69527.1	ggt	MSMEG_0428	MSMEG_1615	Nitrite reductase [NAD(P)H] small subunit.	Gamma-glutamyltranspeptidase; Identified by match to protein family HMM PF01019.	0.607
ABK69527.1	hydA	MSMEG_0428	MSMEG_3553	Nitrite reductase [NAD(P)H] small subunit.	Dihydropyrimidinase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR02033.	0.590
ABK69527.1	hydA-2	MSMEG_0428	MSMEG_3996	Nitrite reductase [NAD(P)H] small subunit.	Dihydropyrimidinase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR02033.	0.595
ABK69527.1	hydA-3	MSMEG_0428	MSMEG_4012	Nitrite reductase [NAD(P)H] small subunit.	Dihydropyrimidinase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR02033.	0.594
ABK69618.1	ABK69527.1	MSMEG_4008	MSMEG_0428	Oxidoreductase, 2OG-Fe(II) oxygenase family protein; Identified by match to protein family HMM PF03171; Belongs to the iron/ascorbate-dependent oxidoreductase family.	Nitrite reductase [NAD(P)H] small subunit.	0.589
ABK69618.1	ABK70858.1	MSMEG_4008	MSMEG_5765	Oxidoreductase, 2OG-Fe(II) oxygenase family protein; Identified by match to protein family HMM PF03171; Belongs to the iron/ascorbate-dependent oxidoreductase family.	Globin; Identified by match to protein family HMM PF01152.	0.696
ABK69618.1	ABK74496.1	MSMEG_4008	MSMEG_0432	Oxidoreductase, 2OG-Fe(II) oxygenase family protein; Identified by match to protein family HMM PF03171; Belongs to the iron/ascorbate-dependent oxidoreductase family.	uroporphyrinogen-III synthetase; Identified by match to protein family HMM PF00486; match to protein family HMM PF02602.	0.533
ABK69618.1	ABK74843.1	MSMEG_4008	MSMEG_5360	Oxidoreductase, 2OG-Fe(II) oxygenase family protein; Identified by match to protein family HMM PF03171; Belongs to the iron/ascorbate-dependent oxidoreductase family.	Formate/nitrate transporter; Identified by match to protein family HMM PF01226.	0.592
ABK69618.1	ggt	MSMEG_4008	MSMEG_1615	Oxidoreductase, 2OG-Fe(II) oxygenase family protein; Identified by match to protein family HMM PF03171; Belongs to the iron/ascorbate-dependent oxidoreductase family.	Gamma-glutamyltranspeptidase; Identified by match to protein family HMM PF01019.	0.737
ABK69618.1	hydA-3	MSMEG_4008	MSMEG_4012	Oxidoreductase, 2OG-Fe(II) oxygenase family protein; Identified by match to protein family HMM PF03171; Belongs to the iron/ascorbate-dependent oxidoreductase family.	Dihydropyrimidinase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR02033.	0.801
ABK70858.1	ABK69527.1	MSMEG_5765	MSMEG_0428	Globin; Identified by match to protein family HMM PF01152.	Nitrite reductase [NAD(P)H] small subunit.	0.614
ABK70858.1	ABK69618.1	MSMEG_5765	MSMEG_4008	Globin; Identified by match to protein family HMM PF01152.	Oxidoreductase, 2OG-Fe(II) oxygenase family protein; Identified by match to protein family HMM PF03171; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.696
ABK70858.1	ABK72663.1	MSMEG_5765	MSMEG_0719	Globin; Identified by match to protein family HMM PF01152.	Flavohemoprotein; Identified by match to protein family HMM PF00042; match to protein family HMM PF00175; match to protein family HMM PF00970; Belongs to the globin family.	0.656
ABK70858.1	ABK72717.1	MSMEG_5765	MSMEG_4695	Globin; Identified by match to protein family HMM PF01152.	Identified by match to protein family HMM PF01152.	0.804
ABK70858.1	ABK74496.1	MSMEG_5765	MSMEG_0432	Globin; Identified by match to protein family HMM PF01152.	uroporphyrinogen-III synthetase; Identified by match to protein family HMM PF00486; match to protein family HMM PF02602.	0.575
ABK70858.1	ABK74843.1	MSMEG_5765	MSMEG_5360	Globin; Identified by match to protein family HMM PF01152.	Formate/nitrate transporter; Identified by match to protein family HMM PF01226.	0.590