STRINGSTRING
ABK71522.1 ABK71522.1 ABK70272.1 ABK70272.1 ABK73948.1 ABK73948.1 ABK69918.1 ABK69918.1 pcaC-5 pcaC-5 ABK70207.1 ABK70207.1 ABK71035.1 ABK71035.1 ABK72903.1 ABK72903.1 ABK71967.1 ABK71967.1 ABK70501.1 ABK70501.1 ABK72673.1 ABK72673.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK71522.1Hypothetical protein; Identified by Glimmer2; putative. (143 aa)    
Predicted Functional Partners:
ABK70272.1
Pyridoxamine 5'-phosphate oxidase family protein; Identified by match to protein family HMM PF01243.
  
  
 0.945
ABK73948.1
Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.
  
  
 0.922
ABK69918.1
Conserved hypothetical protein.
     
 0.892
pcaC-5
4-carboxymuconolactone decarboxylase domain protein; Identified by match to protein family HMM PF02627.
   
  
 0.817
ABK70207.1
Conserved hypothetical protein.
   
  
 0.816
ABK71035.1
Betaine aldehyde dehydrogenase; Identified by match to protein family HMM PF00171.
      
 0.814
ABK72903.1
Conserved hypothetical protein.
  
    0.697
ABK71967.1
Aldehyde dehydrogenase (NAD) family protein; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
   
  
 0.650
ABK70501.1
Aminotransferase, class V family protein; Identified by match to protein family HMM PF00266.
   
  
 0.519
ABK72673.1
Putative aminotransferase; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
  
 0.518
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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