STRINGSTRING
ABK75801.1 ABK75801.1 ABK74366.1 ABK74366.1 ABK74838.1 ABK74838.1 ABK72834.1 ABK72834.1 ABK71917.1 ABK71917.1 ABK73885.1 ABK73885.1 ABK73693.1 ABK73693.1 ABK74440.1 ABK74440.1 pbpA pbpA ABK73493.1 ABK73493.1 ABK74208.1 ABK74208.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK75801.1Cell surface polysaccharide biosynthesis, putative; Identified by match to protein family HMM PF02706. (211 aa)    
Predicted Functional Partners:
ABK74366.1
Protein-tyrosine kinase, putative; Identified by match to protein family HMM PF02706.
 
     0.945
ABK74838.1
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.845
ABK72834.1
Glycosyl transferase, group 1, putative; Identified by match to protein family HMM PF00534.
 
  
 0.817
ABK71917.1
Putative colanic acid biosynthesis acetyltransferase WcaF.
  
  
 0.782
ABK73885.1
Conserved hypothetical protein, putative; Identified by match to protein family HMM PF00657.
  
  
 0.779
ABK73693.1
Mrp protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 
 0.660
ABK74440.1
Undecaprenyl-phosphate galactosephosphotransferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025.
 
  
 0.652
pbpA
Penicillin binding protein transpeptidase domain protein; Cell wall formation. Plays an important role in cell division and cell shape maintenance by cross-linking adjacent peptidoglycan chains through transpeptidation.
     
 0.581
ABK73493.1
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.571
ABK74208.1
Glycosyl transferase; Identified by match to protein family HMM PF00535.
  
  
 0.529
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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