STRINGSTRING
xylA xylA xylB xylB ABK70755.1 ABK70755.1 ABK70442.1 ABK70442.1 araA araA ABK75464.1 ABK75464.1 ABK75701.1 ABK75701.1 ABK71447.1 ABK71447.1 ABK69530.1 ABK69530.1 ABK73886.1 ABK73886.1 ABK71633.1 ABK71633.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAXylose isomerase; Identified by match to protein family HMM PF01261; match to protein family HMM TIGR02631; Belongs to the xylose isomerase family. (407 aa)    
Predicted Functional Partners:
xylB
Xylulokinase; Identified by similarity to SP:P09099; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312.
 
 
 0.998
ABK70755.1
Sorbitol dehydrogenase; Identified by match to protein family HMM PF00107.
   
 
 0.982
ABK70442.1
PTS system, Fru family protein, IIABC components; Identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427.
  
 
 0.973
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
  
 0.949
ABK75464.1
Carbohydrate kinase, fggy; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782; Belongs to the FGGY kinase family.
  
 
 0.944
ABK75701.1
Xylulose kinase; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782; Belongs to the FGGY kinase family.
  
 
 0.943
ABK71447.1
D-mannonate oxidoreductase; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125.
  
 
 0.920
ABK69530.1
Fructokinase; Identified by match to protein family HMM PF00294.
  
 
 0.912
ABK73886.1
Oxidoreductase, zinc-binding dehydrogenase family protein; Identified by match to protein family HMM PF00107.
   
 
 0.909
ABK71633.1
2-deoxy-scyllo-inosamine dehydrogenase; Identified by match to protein family HMM PF00107.
   
 
 0.908
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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