STRINGSTRING
ABK75213.1 ABK75213.1 ABK75474.1 ABK75474.1 ABK70091.1 ABK70091.1 ABK69788.1 ABK69788.1 ABK70299.1 ABK70299.1 trmB trmB ABK73354.1 ABK73354.1 ABK70135.1 ABK70135.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK75213.1Permease; Identified by match to protein family HMM PF03773. (345 aa)    
Predicted Functional Partners:
ABK75474.1
Conserved hypothetical protein.
 
  
 0.986
ABK70091.1
Cadmium transporting P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525.
  
  
 0.603
ABK69788.1
Conserved hypothetical protein.
  
  
 0.599
ABK70299.1
Conserved hypothetical protein.
 
    0.534
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
    0.493
ABK73354.1
Conserved hypothetical protein.
  
    0.487
ABK70135.1
Transcription regulator; Identified by match to protein family HMM PF01047.
 
   
 0.430
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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