ABK69786.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK69786.1

Transcriptional regulatory protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. (309 aa)

Predicted Functional Partners:

ABK72966.1

0.626

ABK74022.1

0.552

ABK72885.1

0.545

ABK70623.1

0.543

ABK73163.1

0.447

ABK75149.1

0.410

ABK72546.1

0.405

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK69786.1	ABK70623.1	MSMEG_6125	MSMEG_0544	Transcriptional regulatory protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	Transcriptional regulator; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	0.543
ABK69786.1	ABK72546.1	MSMEG_6125	MSMEG_6776	Transcriptional regulatory protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	Transcriptional regulator, LysR family protein; Identified by similarity to SP:P32064; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	0.405
ABK69786.1	ABK72885.1	MSMEG_6125	MSMEG_3260	Transcriptional regulatory protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	LysR-family protein transcriptional regulator; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	0.545
ABK69786.1	ABK72966.1	MSMEG_6125	MSMEG_3972	Transcriptional regulatory protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	Transcriptional regulator, LysR family protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	0.626
ABK69786.1	ABK73163.1	MSMEG_6125	MSMEG_6127	Transcriptional regulatory protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	Anti-anti-sigma factor; Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family.	0.447
ABK69786.1	ABK74022.1	MSMEG_6125	MSMEG_6840	Transcriptional regulatory protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	LysR-family protein transcriptional regulator; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	0.552
ABK69786.1	ABK75149.1	MSMEG_6125	MSMEG_1985	Transcriptional regulatory protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	Transcriptional regulator, LysR family protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	0.410
ABK70623.1	ABK69786.1	MSMEG_0544	MSMEG_6125	Transcriptional regulator; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	Transcriptional regulatory protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	0.543
ABK70623.1	ABK72966.1	MSMEG_0544	MSMEG_3972	Transcriptional regulator; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	Transcriptional regulator, LysR family protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	0.665
ABK70623.1	ABK74022.1	MSMEG_0544	MSMEG_6840	Transcriptional regulator; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	LysR-family protein transcriptional regulator; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	0.423
ABK72546.1	ABK69786.1	MSMEG_6776	MSMEG_6125	Transcriptional regulator, LysR family protein; Identified by similarity to SP:P32064; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	Transcriptional regulatory protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	0.405
ABK72546.1	ABK72966.1	MSMEG_6776	MSMEG_3972	Transcriptional regulator, LysR family protein; Identified by similarity to SP:P32064; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	Transcriptional regulator, LysR family protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	0.639
ABK72885.1	ABK69786.1	MSMEG_3260	MSMEG_6125	LysR-family protein transcriptional regulator; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	Transcriptional regulatory protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	0.545
ABK72885.1	ABK72966.1	MSMEG_3260	MSMEG_3972	LysR-family protein transcriptional regulator; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	Transcriptional regulator, LysR family protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	0.582
ABK72966.1	ABK69786.1	MSMEG_3972	MSMEG_6125	Transcriptional regulator, LysR family protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	Transcriptional regulatory protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	0.626
ABK72966.1	ABK70623.1	MSMEG_3972	MSMEG_0544	Transcriptional regulator, LysR family protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	Transcriptional regulator; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	0.665
ABK72966.1	ABK72546.1	MSMEG_3972	MSMEG_6776	Transcriptional regulator, LysR family protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	Transcriptional regulator, LysR family protein; Identified by similarity to SP:P32064; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	0.639
ABK72966.1	ABK72885.1	MSMEG_3972	MSMEG_3260	Transcriptional regulator, LysR family protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	LysR-family protein transcriptional regulator; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	0.582
ABK72966.1	ABK74022.1	MSMEG_3972	MSMEG_6840	Transcriptional regulator, LysR family protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	LysR-family protein transcriptional regulator; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	0.652
ABK72966.1	ABK75149.1	MSMEG_3972	MSMEG_1985	Transcriptional regulator, LysR family protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	Transcriptional regulator, LysR family protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	0.437

page 1 of 2

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About