STRINGSTRING
ABK73063.1 ABK73063.1 cspA cspA topA topA ABK72931.1 ABK72931.1 ABK70716.1 ABK70716.1 ABK73297.1 ABK73297.1 ABK72891.1 ABK72891.1 ABK76128.1 ABK76128.1 ABK74345.1 ABK74345.1 ABK70646.1 ABK70646.1 ABK70110.1 ABK70110.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK73063.1Conserved hypothetical protein. (197 aa)    
Predicted Functional Partners:
cspA
Conserved domain protein; Identified by match to protein family HMM PF00313.
  
  
 0.920
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA sup [...]
       0.745
ABK72931.1
Low molecular weight protein antigen 6.
  
    0.705
ABK70716.1
Identified by match to protein family HMM PF01476.
  
    0.683
ABK73297.1
Conserved hypothetical protein.
  
    0.679
ABK72891.1
Conserved hypothetical protein.
  
    0.666
ABK76128.1
Conserved hypothetical protein.
  
    0.659
ABK74345.1
Conserved hypothetical protein.
  
    0.647
ABK70646.1
ATP-dependent rna helicase, dead/deah box family protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271.
       0.603
ABK70110.1
Conserved hypothetical protein.
  
    0.587
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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