Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK71139.1 | ABK71352.1 | MSMEG_6195 | MSMEG_6191 | Ion-transporting ATPase; Identified by match to protein family HMM PF02374. | Translation initiation inhibitor; Identified by match to protein family HMM PF01042. | 0.619 |
| ABK71139.1 | ABK71713.1 | MSMEG_6195 | MSMEG_6192 | Ion-transporting ATPase; Identified by match to protein family HMM PF02374. | Conserved hypothetical protein. | 0.678 |
| ABK71139.1 | ABK72669.1 | MSMEG_6195 | MSMEG_6193 | Ion-transporting ATPase; Identified by match to protein family HMM PF02374. | Anion-transporting ATPase; Identified by match to protein family HMM PF02374. | 0.994 |
| ABK71139.1 | ABK75967.1 | MSMEG_6195 | MSMEG_6190 | Ion-transporting ATPase; Identified by match to protein family HMM PF02374. | Identified by match to protein family HMM PF00753. | 0.726 |
| ABK71352.1 | ABK71139.1 | MSMEG_6191 | MSMEG_6195 | Translation initiation inhibitor; Identified by match to protein family HMM PF01042. | Ion-transporting ATPase; Identified by match to protein family HMM PF02374. | 0.619 |
| ABK71352.1 | ABK71713.1 | MSMEG_6191 | MSMEG_6192 | Translation initiation inhibitor; Identified by match to protein family HMM PF01042. | Conserved hypothetical protein. | 0.817 |
| ABK71352.1 | ABK72669.1 | MSMEG_6191 | MSMEG_6193 | Translation initiation inhibitor; Identified by match to protein family HMM PF01042. | Anion-transporting ATPase; Identified by match to protein family HMM PF02374. | 0.623 |
| ABK71352.1 | ABK73573.1 | MSMEG_6191 | MSMEG_6535 | Translation initiation inhibitor; Identified by match to protein family HMM PF01042. | Translation elongation factor EF-G; Identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM TIGR00231. | 0.670 |
| ABK71352.1 | ABK75967.1 | MSMEG_6191 | MSMEG_6190 | Translation initiation inhibitor; Identified by match to protein family HMM PF01042. | Identified by match to protein family HMM PF00753. | 0.818 |
| ABK71352.1 | murD | MSMEG_6191 | MSMEG_4229 | Translation initiation inhibitor; Identified by match to protein family HMM PF01042. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.558 |
| ABK71352.1 | murE | MSMEG_6191 | MSMEG_4232 | Translation initiation inhibitor; Identified by match to protein family HMM PF01042. | UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.561 |
| ABK71352.1 | murQ | MSMEG_6191 | MSMEG_0193 | Translation initiation inhibitor; Identified by match to protein family HMM PF01042. | Putative glucokinase regulator; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate. | 0.581 |
| ABK71352.1 | nnrD | MSMEG_6191 | MSMEG_1573 | Translation initiation inhibitor; Identified by match to protein family HMM PF01042. | Carbohydrate kinase family protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repa [...] | 0.461 |
| ABK71352.1 | rph | MSMEG_6191 | MSMEG_4901 | Translation initiation inhibitor; Identified by match to protein family HMM PF01042. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.478 |
| ABK71713.1 | ABK71139.1 | MSMEG_6192 | MSMEG_6195 | Conserved hypothetical protein. | Ion-transporting ATPase; Identified by match to protein family HMM PF02374. | 0.678 |
| ABK71713.1 | ABK71352.1 | MSMEG_6192 | MSMEG_6191 | Conserved hypothetical protein. | Translation initiation inhibitor; Identified by match to protein family HMM PF01042. | 0.817 |
| ABK71713.1 | ABK72669.1 | MSMEG_6192 | MSMEG_6193 | Conserved hypothetical protein. | Anion-transporting ATPase; Identified by match to protein family HMM PF02374. | 0.748 |
| ABK71713.1 | ABK75967.1 | MSMEG_6192 | MSMEG_6190 | Conserved hypothetical protein. | Identified by match to protein family HMM PF00753. | 0.896 |
| ABK72669.1 | ABK71139.1 | MSMEG_6193 | MSMEG_6195 | Anion-transporting ATPase; Identified by match to protein family HMM PF02374. | Ion-transporting ATPase; Identified by match to protein family HMM PF02374. | 0.994 |
| ABK72669.1 | ABK71352.1 | MSMEG_6193 | MSMEG_6191 | Anion-transporting ATPase; Identified by match to protein family HMM PF02374. | Translation initiation inhibitor; Identified by match to protein family HMM PF01042. | 0.623 |
page 1 of 2