STRINGSTRING
ABK72150.1 ABK72150.1 ABK73463.1 ABK73463.1 ABK74024.1 ABK74024.1 ABK72333.1 ABK72333.1 ABK74651.1 ABK74651.1 ABK75755.1 ABK75755.1 nirB nirB ABK70551.1 ABK70551.1 ABK73285.1 ABK73285.1 cobA cobA ABK73608.1 ABK73608.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK72150.1Hemerythrin HHE cation binding domain subfamily protein, putative. (194 aa)    
Predicted Functional Partners:
ABK73463.1
Iron-sulfur binding oxidoreductase; Identified by match to protein family HMM PF00355; match to protein family HMM PF01266.
 
  
 0.879
ABK74024.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106.
  
  
 0.799
ABK72333.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.
  
    0.712
ABK74651.1
Putative membrane protein; Identified by match to protein family HMM PF08044.
 
  
 0.661
ABK75755.1
Anthranilate dioxygenase reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992.
  
 
 0.642
nirB
Nitrite reductase [NAD(P)H], large subunit; Identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
 
 0.640
ABK70551.1
Pyridine nucleotide-disulphide oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992.
  
 
 0.639
ABK73285.1
Pyridine nucleotide-disulphide oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992.
  
 
 0.639
cobA
uroporphyrin-III C-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469; match to protein family HMM TIGR01470.
  
  
 0.628
ABK73608.1
Probable regulatory protein; Identified by match to protein family HMM PF00440.
  
    0.625
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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