Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK70561.1 | ABK72610.1 | MSMEG_6289 | MSMEG_6288 | Trypsin; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | Conserved hypothetical protein. | 0.646 |
ABK70561.1 | ABK75781.1 | MSMEG_6289 | MSMEG_6290 | Trypsin; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | Putative DNA-binding protein. | 0.698 |
ABK71797.1 | ABK72610.1 | MSMEG_0132 | MSMEG_6288 | Conserved hypothetical protein; Identified by match to protein family HMM PF02405. | Conserved hypothetical protein. | 0.443 |
ABK72610.1 | ABK70561.1 | MSMEG_6288 | MSMEG_6289 | Conserved hypothetical protein. | Trypsin; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | 0.646 |
ABK72610.1 | ABK71797.1 | MSMEG_6288 | MSMEG_0132 | Conserved hypothetical protein. | Conserved hypothetical protein; Identified by match to protein family HMM PF02405. | 0.443 |
ABK72610.1 | ABK73404.1 | MSMEG_6288 | MSMEG_1073 | Conserved hypothetical protein. | Oxidoreductase, short-chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.552 |
ABK72610.1 | ABK75781.1 | MSMEG_6288 | MSMEG_6290 | Conserved hypothetical protein. | Putative DNA-binding protein. | 0.546 |
ABK73404.1 | ABK72610.1 | MSMEG_1073 | MSMEG_6288 | Oxidoreductase, short-chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Conserved hypothetical protein. | 0.552 |
ABK75781.1 | ABK70561.1 | MSMEG_6290 | MSMEG_6289 | Putative DNA-binding protein. | Trypsin; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | 0.698 |
ABK75781.1 | ABK72610.1 | MSMEG_6290 | MSMEG_6288 | Putative DNA-binding protein. | Conserved hypothetical protein. | 0.546 |