Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK70094.1 | ABK70561.1 | MSMEG_6291 | MSMEG_6289 | D-amino-acid dehydrogenase; Identified by match to protein family HMM PF01266. | Trypsin; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | 0.687 |
ABK70094.1 | ABK71925.1 | MSMEG_6291 | MSMEG_6292 | D-amino-acid dehydrogenase; Identified by match to protein family HMM PF01266. | Transcription elongation factor GreA; Identified by match to protein family HMM PF01272. | 0.658 |
ABK70094.1 | ABK75655.1 | MSMEG_6291 | MSMEG_1129 | D-amino-acid dehydrogenase; Identified by match to protein family HMM PF01266. | D-amino-acid dehydrogenase; Identified by match to protein family HMM PF01266. | 0.903 |
ABK70094.1 | ABK75781.1 | MSMEG_6291 | MSMEG_6290 | D-amino-acid dehydrogenase; Identified by match to protein family HMM PF01266. | Putative DNA-binding protein. | 0.845 |
ABK70132.1 | ABK70744.1 | MSMEG_0852 | MSMEG_0172 | CBS domain protein; Identified by match to protein family HMM PF00571. | Probable conserved transmembrane protein, putative. | 0.588 |
ABK70132.1 | ABK75781.1 | MSMEG_0852 | MSMEG_6290 | CBS domain protein; Identified by match to protein family HMM PF00571. | Putative DNA-binding protein. | 0.507 |
ABK70561.1 | ABK70094.1 | MSMEG_6289 | MSMEG_6291 | Trypsin; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | D-amino-acid dehydrogenase; Identified by match to protein family HMM PF01266. | 0.687 |
ABK70561.1 | ABK72610.1 | MSMEG_6289 | MSMEG_6288 | Trypsin; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | Conserved hypothetical protein. | 0.646 |
ABK70561.1 | ABK75655.1 | MSMEG_6289 | MSMEG_1129 | Trypsin; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | D-amino-acid dehydrogenase; Identified by match to protein family HMM PF01266. | 0.499 |
ABK70561.1 | ABK75781.1 | MSMEG_6289 | MSMEG_6290 | Trypsin; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | Putative DNA-binding protein. | 0.698 |
ABK70744.1 | ABK70132.1 | MSMEG_0172 | MSMEG_0852 | Probable conserved transmembrane protein, putative. | CBS domain protein; Identified by match to protein family HMM PF00571. | 0.588 |
ABK70744.1 | ABK75781.1 | MSMEG_0172 | MSMEG_6290 | Probable conserved transmembrane protein, putative. | Putative DNA-binding protein. | 0.551 |
ABK71149.1 | ABK75781.1 | MSMEG_4247 | MSMEG_6290 | Probable conserved integral membrane protein; Responsible for the addition of alpha-(1-2) mannose branches to the linear mannan core on the biosynthetic pathway to mature Lipoarabinomannan (LAM). | Putative DNA-binding protein. | 0.495 |
ABK71925.1 | ABK70094.1 | MSMEG_6292 | MSMEG_6291 | Transcription elongation factor GreA; Identified by match to protein family HMM PF01272. | D-amino-acid dehydrogenase; Identified by match to protein family HMM PF01266. | 0.658 |
ABK71925.1 | ABK75781.1 | MSMEG_6292 | MSMEG_6290 | Transcription elongation factor GreA; Identified by match to protein family HMM PF01272. | Putative DNA-binding protein. | 0.664 |
ABK72610.1 | ABK70561.1 | MSMEG_6288 | MSMEG_6289 | Conserved hypothetical protein. | Trypsin; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | 0.646 |
ABK72610.1 | ABK75781.1 | MSMEG_6288 | MSMEG_6290 | Conserved hypothetical protein. | Putative DNA-binding protein. | 0.546 |
ABK74124.1 | ABK75781.1 | MSMEG_2838 | MSMEG_6290 | Conserved hypothetical protein. | Putative DNA-binding protein. | 0.649 |
ABK74694.1 | ABK75781.1 | MSMEG_4858 | MSMEG_6290 | Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440. | Putative DNA-binding protein. | 0.493 |
ABK75655.1 | ABK70094.1 | MSMEG_1129 | MSMEG_6291 | D-amino-acid dehydrogenase; Identified by match to protein family HMM PF01266. | D-amino-acid dehydrogenase; Identified by match to protein family HMM PF01266. | 0.903 |
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