Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK70095.1 | ABK71608.1 | MSMEG_2778 | MSMEG_1930 | Identified by match to protein family HMM PF00570; match to protein family HMM PF01612. | DEAD/DEAH box helicase; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; Belongs to the DEAD box helicase family. | 0.849 |
| ABK70095.1 | ABK72176.1 | MSMEG_2778 | MSMEG_1540 | Identified by match to protein family HMM PF00570; match to protein family HMM PF01612. | ATP-dependent RNA helicase; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271. | 0.779 |
| ABK70095.1 | ABK75705.1 | MSMEG_2778 | MSMEG_6303 | Identified by match to protein family HMM PF00570; match to protein family HMM PF01612. | Para-nitrobenzyl esterase; Identified by match to protein family HMM PF00135; Belongs to the type-B carboxylesterase/lipase family. | 0.653 |
| ABK70095.1 | deaD | MSMEG_2778 | MSMEG_5042 | Identified by match to protein family HMM PF00570; match to protein family HMM PF01612. | ATP-dependent rna helicase, dead/deah box family protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 0.778 |
| ABK70095.1 | hrpA | MSMEG_2778 | MSMEG_6587 | Identified by match to protein family HMM PF00570; match to protein family HMM PF01612. | ATP-dependent helicase HrpA; Identified by match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717; match to protein family HMM TIGR01967. | 0.957 |
| ABK70095.1 | rpsD | MSMEG_2778 | MSMEG_1523 | Identified by match to protein family HMM PF00570; match to protein family HMM PF01612. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.951 |
| ABK70095.1 | rpsK | MSMEG_2778 | MSMEG_1522 | Identified by match to protein family HMM PF00570; match to protein family HMM PF01612. | Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.937 |
| ABK70355.1 | ABK70886.1 | MSMEG_0806 | MSMEG_0807 | Hydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389. | Leupeptin-inactivating enzyme 1; Identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389. | 0.904 |
| ABK70355.1 | ABK75705.1 | MSMEG_0806 | MSMEG_6303 | Hydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389. | Para-nitrobenzyl esterase; Identified by match to protein family HMM PF00135; Belongs to the type-B carboxylesterase/lipase family. | 0.691 |
| ABK70355.1 | gmk | MSMEG_0806 | MSMEG_3051 | Hydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389. | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | 0.487 |
| ABK70355.1 | hrpA | MSMEG_0806 | MSMEG_6587 | Hydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389. | ATP-dependent helicase HrpA; Identified by match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717; match to protein family HMM TIGR01967. | 0.594 |
| ABK70886.1 | ABK70355.1 | MSMEG_0807 | MSMEG_0806 | Leupeptin-inactivating enzyme 1; Identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389. | Hydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389. | 0.904 |
| ABK70886.1 | ABK75705.1 | MSMEG_0807 | MSMEG_6303 | Leupeptin-inactivating enzyme 1; Identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389. | Para-nitrobenzyl esterase; Identified by match to protein family HMM PF00135; Belongs to the type-B carboxylesterase/lipase family. | 0.692 |
| ABK70886.1 | gmk | MSMEG_0807 | MSMEG_3051 | Leupeptin-inactivating enzyme 1; Identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389. | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | 0.489 |
| ABK70886.1 | hrpA | MSMEG_0807 | MSMEG_6587 | Leupeptin-inactivating enzyme 1; Identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389. | ATP-dependent helicase HrpA; Identified by match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717; match to protein family HMM TIGR01967. | 0.594 |
| ABK71608.1 | ABK70095.1 | MSMEG_1930 | MSMEG_2778 | DEAD/DEAH box helicase; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; Belongs to the DEAD box helicase family. | Identified by match to protein family HMM PF00570; match to protein family HMM PF01612. | 0.849 |
| ABK71608.1 | ABK75705.1 | MSMEG_1930 | MSMEG_6303 | DEAD/DEAH box helicase; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; Belongs to the DEAD box helicase family. | Para-nitrobenzyl esterase; Identified by match to protein family HMM PF00135; Belongs to the type-B carboxylesterase/lipase family. | 0.615 |
| ABK71608.1 | hrpA | MSMEG_1930 | MSMEG_6587 | DEAD/DEAH box helicase; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; Belongs to the DEAD box helicase family. | ATP-dependent helicase HrpA; Identified by match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717; match to protein family HMM TIGR01967. | 0.830 |
| ABK71608.1 | rpsD | MSMEG_1930 | MSMEG_1523 | DEAD/DEAH box helicase; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; Belongs to the DEAD box helicase family. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.863 |
| ABK71608.1 | rpsK | MSMEG_1930 | MSMEG_1522 | DEAD/DEAH box helicase; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; Belongs to the DEAD box helicase family. | Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.811 |
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