Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK70359.1 | ABK72078.1 | MSMEG_6346 | MSMEG_6348 | Hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.493 |
ABK70359.1 | ABK75046.1 | MSMEG_6346 | MSMEG_6345 | Hypothetical protein; Identified by Glimmer2; putative. | Conserved hypothetical protein. | 0.557 |
ABK70359.1 | ABK75728.1 | MSMEG_6346 | MSMEG_6347 | Hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.773 |
ABK70359.1 | atpD | MSMEG_6346 | MSMEG_4936 | Hypothetical protein; Identified by Glimmer2; putative. | ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | 0.516 |
ABK70359.1 | mce | MSMEG_6346 | MSMEG_4921 | Hypothetical protein; Identified by Glimmer2; putative. | methylmalonyl-CoA epimerase; Identified by match to protein family HMM PF00903; match to protein family HMM TIGR03081. | 0.815 |
ABK72078.1 | ABK70359.1 | MSMEG_6348 | MSMEG_6346 | Hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.493 |
ABK72078.1 | ABK75728.1 | MSMEG_6348 | MSMEG_6347 | Hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.502 |
ABK75046.1 | ABK70359.1 | MSMEG_6345 | MSMEG_6346 | Conserved hypothetical protein. | Hypothetical protein; Identified by Glimmer2; putative. | 0.557 |
ABK75046.1 | ABK75728.1 | MSMEG_6345 | MSMEG_6347 | Conserved hypothetical protein. | Hypothetical protein; Identified by Glimmer2; putative. | 0.544 |
ABK75728.1 | ABK70359.1 | MSMEG_6347 | MSMEG_6346 | Hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.773 |
ABK75728.1 | ABK72078.1 | MSMEG_6347 | MSMEG_6348 | Hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.502 |
ABK75728.1 | ABK75046.1 | MSMEG_6347 | MSMEG_6345 | Hypothetical protein; Identified by Glimmer2; putative. | Conserved hypothetical protein. | 0.544 |
atpD | ABK70359.1 | MSMEG_4936 | MSMEG_6346 | ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | Hypothetical protein; Identified by Glimmer2; putative. | 0.516 |
atpD | mce | MSMEG_4936 | MSMEG_4921 | ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | methylmalonyl-CoA epimerase; Identified by match to protein family HMM PF00903; match to protein family HMM TIGR03081. | 0.446 |
mce | ABK70359.1 | MSMEG_4921 | MSMEG_6346 | methylmalonyl-CoA epimerase; Identified by match to protein family HMM PF00903; match to protein family HMM TIGR03081. | Hypothetical protein; Identified by Glimmer2; putative. | 0.815 |
mce | atpD | MSMEG_4921 | MSMEG_4936 | methylmalonyl-CoA epimerase; Identified by match to protein family HMM PF00903; match to protein family HMM TIGR03081. | ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | 0.446 |