Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK70359.1 | ABK72078.1 | MSMEG_6346 | MSMEG_6348 | Hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.493 |
ABK70359.1 | ABK75728.1 | MSMEG_6346 | MSMEG_6347 | Hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.773 |
ABK72078.1 | ABK70359.1 | MSMEG_6348 | MSMEG_6346 | Hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.493 |
ABK72078.1 | ABK72796.1 | MSMEG_6348 | MSMEG_0971 | Hypothetical protein; Identified by Glimmer2; putative. | Conserved hypothetical protein. | 0.418 |
ABK72078.1 | ABK74056.1 | MSMEG_6348 | MSMEG_6151 | Hypothetical protein; Identified by Glimmer2; putative. | Alpha/beta hydrolase fold-1; Identified by match to protein family HMM PF00561. | 0.820 |
ABK72078.1 | ABK75728.1 | MSMEG_6348 | MSMEG_6347 | Hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.502 |
ABK72078.1 | ABK76037.1 | MSMEG_6348 | MSMEG_5759 | Hypothetical protein; Identified by Glimmer2; putative. | Pe family protein. | 0.823 |
ABK72078.1 | xerC | MSMEG_6348 | MSMEG_2515 | Hypothetical protein; Identified by Glimmer2; putative. | Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.646 |
ABK72796.1 | ABK72078.1 | MSMEG_0971 | MSMEG_6348 | Conserved hypothetical protein. | Hypothetical protein; Identified by Glimmer2; putative. | 0.418 |
ABK74056.1 | ABK72078.1 | MSMEG_6151 | MSMEG_6348 | Alpha/beta hydrolase fold-1; Identified by match to protein family HMM PF00561. | Hypothetical protein; Identified by Glimmer2; putative. | 0.820 |
ABK74056.1 | ABK76037.1 | MSMEG_6151 | MSMEG_5759 | Alpha/beta hydrolase fold-1; Identified by match to protein family HMM PF00561. | Pe family protein. | 0.822 |
ABK74056.1 | xerC | MSMEG_6151 | MSMEG_2515 | Alpha/beta hydrolase fold-1; Identified by match to protein family HMM PF00561. | Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.606 |
ABK75728.1 | ABK70359.1 | MSMEG_6347 | MSMEG_6346 | Hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.773 |
ABK75728.1 | ABK72078.1 | MSMEG_6347 | MSMEG_6348 | Hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.502 |
ABK76037.1 | ABK72078.1 | MSMEG_5759 | MSMEG_6348 | Pe family protein. | Hypothetical protein; Identified by Glimmer2; putative. | 0.823 |
ABK76037.1 | ABK74056.1 | MSMEG_5759 | MSMEG_6151 | Pe family protein. | Alpha/beta hydrolase fold-1; Identified by match to protein family HMM PF00561. | 0.822 |
ABK76037.1 | xerC | MSMEG_5759 | MSMEG_2515 | Pe family protein. | Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.592 |
xerC | ABK72078.1 | MSMEG_2515 | MSMEG_6348 | Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | Hypothetical protein; Identified by Glimmer2; putative. | 0.646 |
xerC | ABK74056.1 | MSMEG_2515 | MSMEG_6151 | Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | Alpha/beta hydrolase fold-1; Identified by match to protein family HMM PF00561. | 0.606 |
xerC | ABK76037.1 | MSMEG_2515 | MSMEG_5759 | Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | Pe family protein. | 0.592 |