Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK71134.1 | ABK72375.1 | MSMEG_6388 | MSMEG_6387 | Probable arabinosyltransferase B; Identified by match to protein family HMM PF04602. | Probable arabinosyltransferase A; Identified by match to protein family HMM PF04602. | 0.835 |
| ABK71134.1 | ABK72840.1 | MSMEG_6388 | MSMEG_6389 | Probable arabinosyltransferase B; Identified by match to protein family HMM PF04602. | Probable arabinosyltransferase A; Identified by match to protein family HMM PF04602. | 0.999 |
| ABK71134.1 | ABK74014.1 | MSMEG_6388 | MSMEG_3879 | Probable arabinosyltransferase B; Identified by match to protein family HMM PF04602. | Short chain dehydrogenase; Identified by match to protein family HMM PF00106. | 0.479 |
| ABK71134.1 | ABK74530.1 | MSMEG_6388 | MSMEG_6372 | Probable arabinosyltransferase B; Identified by match to protein family HMM PF04602. | Identified by match to protein family HMM PF04138. | 0.806 |
| ABK71134.1 | ABK74962.1 | MSMEG_6388 | MSMEG_6401 | Probable arabinosyltransferase B; Identified by match to protein family HMM PF04602. | Prenyltransferase, UbiA family protein; Involved in the biosynthesis of decaprenylphosphoryl arabinose (DPA) a precursor for arabinan synthesis in mycobacterial cell wall biosynthesis. Catalyzes the transfer of a 5-phosphoribosyl residue from phosphoribose diphosphate (pRpp) to decaprenyl phosphate (DP) to form decaprenylphosphoryl-5-phosphoribose (DPPR). | 0.650 |
| ABK71134.1 | aftA | MSMEG_6388 | MSMEG_6386 | Probable arabinosyltransferase B; Identified by match to protein family HMM PF04602. | Membrane protein; Involved in the biosynthesis of the arabinogalactan (AG) region of the mycolylarabinogalactan-peptidoglycan (mAGP) complex, an essential component of the mycobacterial cell wall. Catalyzes the addition of the first key arabinofuranosyl (Araf) residue from the sugar donor decaprenyl-phospho-arabinose (DPA) on the C-5 of a 6-linked galactofuranosyl (Galf) of the galactan domain, thus 'priming' the galactan for further elaboration by other arabinofuranosyltransferases. It is not able to add an Araf residue to a terminal Galf. | 0.984 |
| ABK71134.1 | aftC | MSMEG_6388 | MSMEG_2785 | Probable arabinosyltransferase B; Identified by match to protein family HMM PF04602. | Putative conserved integral membrane protein; Involved in the biosynthesis of the arabinogalactan (AG) region of the mycolylarabinogalactan-peptidoglycan (mAGP) complex, an essential component of the mycobacterial cell wall. Catalyzes the addition of an arabinofuranosyl (Araf) residue from the sugar donor beta-D-arabinofuranosyl-1-monophosphoryldecaprenol (DPA) on the C-3 of an alpha-(1->5)-linked Araf from the arabinan backbone of AG. | 0.811 |
| ABK71134.1 | dprE1 | MSMEG_6388 | MSMEG_6382 | Probable arabinosyltransferase B; Identified by match to protein family HMM PF04602. | Oxidoreductase, FAD-binding; Component of the DprE1-DprE2 complex that catalyzes the 2- step epimerization of decaprenyl-phospho-ribose (DPR) to decaprenyl- phospho-arabinose (DPA), a key precursor that serves as the arabinose donor required for the synthesis of cell-wall arabinans. DprE1 catalyzes the first step of epimerization, namely FAD-dependent oxidation of the C2' hydroxyl of DPR to yield the keto intermediate decaprenyl-phospho-2'-keto-D-arabinose (DPX). The intermediate DPX is then transferred to DprE2 subunit of the epimerase complex, most probably through a 'substrate chann [...] | 0.801 |
| ABK71134.1 | dprE2 | MSMEG_6388 | MSMEG_6385 | Probable arabinosyltransferase B; Identified by match to protein family HMM PF04602. | Putative oxidoreductase in MprA 5'region; Component of the DprE1-DprE2 complex that catalyzes the 2- step epimerization of decaprenyl-phospho-ribose (DPR) to decaprenyl- phospho-arabinose (DPA), a key precursor that serves as the arabinose donor required for the synthesis of cell-wall arabinans. DprE1 catalyzes the first step of epimerization, namely FAD-dependent oxidation of the C2' hydroxyl of DPR to yield the keto intermediate decaprenyl-phospho-2'-keto-D-arabinose (DPX). The intermediate DPX is then transferred to DprE2 subunit of the epimerase complex, most probably through a 'su [...] | 0.851 |
| ABK72375.1 | ABK71134.1 | MSMEG_6387 | MSMEG_6388 | Probable arabinosyltransferase A; Identified by match to protein family HMM PF04602. | Probable arabinosyltransferase B; Identified by match to protein family HMM PF04602. | 0.835 |
| ABK72375.1 | ABK72840.1 | MSMEG_6387 | MSMEG_6389 | Probable arabinosyltransferase A; Identified by match to protein family HMM PF04602. | Probable arabinosyltransferase A; Identified by match to protein family HMM PF04602. | 0.698 |
| ABK72375.1 | ABK74014.1 | MSMEG_6387 | MSMEG_3879 | Probable arabinosyltransferase A; Identified by match to protein family HMM PF04602. | Short chain dehydrogenase; Identified by match to protein family HMM PF00106. | 0.504 |
| ABK72375.1 | ABK74530.1 | MSMEG_6387 | MSMEG_6372 | Probable arabinosyltransferase A; Identified by match to protein family HMM PF04602. | Identified by match to protein family HMM PF04138. | 0.895 |
| ABK72375.1 | ABK74962.1 | MSMEG_6387 | MSMEG_6401 | Probable arabinosyltransferase A; Identified by match to protein family HMM PF04602. | Prenyltransferase, UbiA family protein; Involved in the biosynthesis of decaprenylphosphoryl arabinose (DPA) a precursor for arabinan synthesis in mycobacterial cell wall biosynthesis. Catalyzes the transfer of a 5-phosphoribosyl residue from phosphoribose diphosphate (pRpp) to decaprenyl phosphate (DP) to form decaprenylphosphoryl-5-phosphoribose (DPPR). | 0.723 |
| ABK72375.1 | aftA | MSMEG_6387 | MSMEG_6386 | Probable arabinosyltransferase A; Identified by match to protein family HMM PF04602. | Membrane protein; Involved in the biosynthesis of the arabinogalactan (AG) region of the mycolylarabinogalactan-peptidoglycan (mAGP) complex, an essential component of the mycobacterial cell wall. Catalyzes the addition of the first key arabinofuranosyl (Araf) residue from the sugar donor decaprenyl-phospho-arabinose (DPA) on the C-5 of a 6-linked galactofuranosyl (Galf) of the galactan domain, thus 'priming' the galactan for further elaboration by other arabinofuranosyltransferases. It is not able to add an Araf residue to a terminal Galf. | 0.994 |
| ABK72375.1 | aftC | MSMEG_6387 | MSMEG_2785 | Probable arabinosyltransferase A; Identified by match to protein family HMM PF04602. | Putative conserved integral membrane protein; Involved in the biosynthesis of the arabinogalactan (AG) region of the mycolylarabinogalactan-peptidoglycan (mAGP) complex, an essential component of the mycobacterial cell wall. Catalyzes the addition of an arabinofuranosyl (Araf) residue from the sugar donor beta-D-arabinofuranosyl-1-monophosphoryldecaprenol (DPA) on the C-3 of an alpha-(1->5)-linked Araf from the arabinan backbone of AG. | 0.831 |
| ABK72375.1 | dprE1 | MSMEG_6387 | MSMEG_6382 | Probable arabinosyltransferase A; Identified by match to protein family HMM PF04602. | Oxidoreductase, FAD-binding; Component of the DprE1-DprE2 complex that catalyzes the 2- step epimerization of decaprenyl-phospho-ribose (DPR) to decaprenyl- phospho-arabinose (DPA), a key precursor that serves as the arabinose donor required for the synthesis of cell-wall arabinans. DprE1 catalyzes the first step of epimerization, namely FAD-dependent oxidation of the C2' hydroxyl of DPR to yield the keto intermediate decaprenyl-phospho-2'-keto-D-arabinose (DPX). The intermediate DPX is then transferred to DprE2 subunit of the epimerase complex, most probably through a 'substrate chann [...] | 0.919 |
| ABK72375.1 | dprE2 | MSMEG_6387 | MSMEG_6385 | Probable arabinosyltransferase A; Identified by match to protein family HMM PF04602. | Putative oxidoreductase in MprA 5'region; Component of the DprE1-DprE2 complex that catalyzes the 2- step epimerization of decaprenyl-phospho-ribose (DPR) to decaprenyl- phospho-arabinose (DPA), a key precursor that serves as the arabinose donor required for the synthesis of cell-wall arabinans. DprE1 catalyzes the first step of epimerization, namely FAD-dependent oxidation of the C2' hydroxyl of DPR to yield the keto intermediate decaprenyl-phospho-2'-keto-D-arabinose (DPX). The intermediate DPX is then transferred to DprE2 subunit of the epimerase complex, most probably through a 'su [...] | 0.951 |
| ABK72840.1 | ABK71134.1 | MSMEG_6389 | MSMEG_6388 | Probable arabinosyltransferase A; Identified by match to protein family HMM PF04602. | Probable arabinosyltransferase B; Identified by match to protein family HMM PF04602. | 0.999 |
| ABK72840.1 | ABK72375.1 | MSMEG_6389 | MSMEG_6387 | Probable arabinosyltransferase A; Identified by match to protein family HMM PF04602. | Probable arabinosyltransferase A; Identified by match to protein family HMM PF04602. | 0.698 |
page 1 of 5