STRINGSTRING
ABK73392.1 ABK73392.1 ABK70782.1 ABK70782.1 ABK72217.1 ABK72217.1 ABK70702.1 ABK70702.1 ABK72509.1 ABK72509.1 ABK75535.1 ABK75535.1 ABK73706.1 ABK73706.1 ABK74820.1 ABK74820.1 ABK75931.1 ABK75931.1 ABK75004.1 ABK75004.1 ABK74083.1 ABK74083.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK73392.1Transcriptional regulatory protein; Identified by match to protein family HMM PF00440. (205 aa)    
Predicted Functional Partners:
ABK70782.1
Cytochrome c oxidase subunit III family protein; Identified by match to protein family HMM PF00510.
 
     0.794
ABK72217.1
Conserved hypothetical protein.
  
    0.765
ABK70702.1
Conserved hypothetical protein.
  
    0.708
ABK72509.1
Conserved hypothetical protein.
  
    0.707
ABK75535.1
RNA polymerase sigma-70 factor; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family.
  
  
 0.618
ABK73706.1
DNA-binding response regulator, PhoP family protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
   
  
 0.616
ABK74820.1
KDP operon transcriptional regulatory protein KdpE; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
   
  
 0.597
ABK75931.1
Iron repressor protein; Identified by match to protein family HMM PF01325; match to protein family HMM PF02742; match to protein family HMM PF04023.
  
  
 0.586
ABK75004.1
RNA polymerase sigma-70 factor, TIGR02957 family protein; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; match to protein family HMM TIGR02957; Belongs to the sigma-70 factor family.
  
  
 0.586
ABK74083.1
RNA polymerase sigma factor, sigma-70 family protein; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family.
  
  
 0.584
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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