ABK71953.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK71953.1

Identified by match to protein family HMM PF00005. (255 aa)

Predicted Functional Partners:

ABK69956.1

0.980

ABK74827.1

0.969

ABK72437.1

0.933

ABK75627.1

0.925

ABK75561.1

0.920

ABK71959.1

0.916

ABK75885.1

0.916

ABK71881.1

0.916

ABK71429.1

0.914

ABK73127.1

0.912

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK69956.1	ABK71429.1	MSMEG_6594	MSMEG_1613	Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	ABC polar amino acid transporter, inner membrane subunit; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.457
ABK69956.1	ABK71881.1	MSMEG_6594	MSMEG_6909	Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family protein; Identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.730
ABK69956.1	ABK71953.1	MSMEG_6594	MSMEG_6593	Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Identified by match to protein family HMM PF00005.	0.980
ABK69956.1	ABK71959.1	MSMEG_6594	MSMEG_2725	Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Glutamate transporter permease protein GluD; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.578
ABK69956.1	ABK72437.1	MSMEG_6594	MSMEG_6307	Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Glutamine-binding periplasmic protein/glutamine transport system permease protein; Identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.723
ABK69956.1	ABK73127.1	MSMEG_6594	MSMEG_3236	Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	ABC-type amino acid transport system, permease component; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.447
ABK69956.1	ABK74827.1	MSMEG_6594	MSMEG_6595	Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Identified by match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.	0.971
ABK69956.1	ABK75561.1	MSMEG_6594	MSMEG_0177	Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	ABC polar amino acid family protein transporter, inner membrane subunit; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.435
ABK69956.1	ABK75627.1	MSMEG_6594	MSMEG_5318	Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Glutamine ABC transporter, permease/substrate-binding protein; Identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.716
ABK69956.1	ABK75885.1	MSMEG_6594	MSMEG_2726	Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Glutamate permease; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.509
ABK71429.1	ABK69956.1	MSMEG_1613	MSMEG_6594	ABC polar amino acid transporter, inner membrane subunit; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.457
ABK71429.1	ABK71881.1	MSMEG_1613	MSMEG_6909	ABC polar amino acid transporter, inner membrane subunit; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family protein; Identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.725
ABK71429.1	ABK71953.1	MSMEG_1613	MSMEG_6593	ABC polar amino acid transporter, inner membrane subunit; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Identified by match to protein family HMM PF00005.	0.914
ABK71429.1	ABK71959.1	MSMEG_1613	MSMEG_2725	ABC polar amino acid transporter, inner membrane subunit; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Glutamate transporter permease protein GluD; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.565
ABK71429.1	ABK72437.1	MSMEG_1613	MSMEG_6307	ABC polar amino acid transporter, inner membrane subunit; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Glutamine-binding periplasmic protein/glutamine transport system permease protein; Identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.709
ABK71429.1	ABK73127.1	MSMEG_1613	MSMEG_3236	ABC polar amino acid transporter, inner membrane subunit; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	ABC-type amino acid transport system, permease component; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.482
ABK71429.1	ABK74827.1	MSMEG_1613	MSMEG_6595	ABC polar amino acid transporter, inner membrane subunit; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Identified by match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.	0.873
ABK71429.1	ABK75561.1	MSMEG_1613	MSMEG_0177	ABC polar amino acid transporter, inner membrane subunit; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	ABC polar amino acid family protein transporter, inner membrane subunit; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.471
ABK71429.1	ABK75627.1	MSMEG_1613	MSMEG_5318	ABC polar amino acid transporter, inner membrane subunit; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Glutamine ABC transporter, permease/substrate-binding protein; Identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.707
ABK71429.1	ABK75885.1	MSMEG_1613	MSMEG_2726	ABC polar amino acid transporter, inner membrane subunit; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Glutamate permease; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.513