Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK69826.1 | ABK73940.1 | MSMEG_5905 | MSMEG_2072 | Hypothetical protein; Identified by Glimmer2; putative. | 3-hydroxy-3-methylglutaryl-CoA lyase; Identified by match to protein family HMM PF00682. | 0.753 |
| ABK69826.1 | ABK75830.1 | MSMEG_5905 | MSMEG_6644 | Hypothetical protein; Identified by Glimmer2; putative. | malyl-CoA lyase; Identified by match to protein family HMM PF03328; Belongs to the HpcH/HpaI aldolase family. | 0.585 |
| ABK72354.1 | ABK75830.1 | MSMEG_5191 | MSMEG_6644 | Siderophore binding protein; Identified by match to protein family HMM PF00132. | malyl-CoA lyase; Identified by match to protein family HMM PF03328; Belongs to the HpcH/HpaI aldolase family. | 0.586 |
| ABK72516.1 | ABK73940.1 | MSMEG_6642 | MSMEG_2072 | Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family. | 3-hydroxy-3-methylglutaryl-CoA lyase; Identified by match to protein family HMM PF00682. | 0.409 |
| ABK72516.1 | ABK75575.1 | MSMEG_6642 | MSMEG_6641 | Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family. | Nitrilotriacetate monooxygenase component A. | 0.785 |
| ABK72516.1 | ABK75830.1 | MSMEG_6642 | MSMEG_6644 | Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family. | malyl-CoA lyase; Identified by match to protein family HMM PF03328; Belongs to the HpcH/HpaI aldolase family. | 0.767 |
| ABK72876.1 | ABK75830.1 | MSMEG_0014 | MSMEG_6644 | Formyl transferase; Identified by match to protein family HMM PF00551; match to protein family HMM PF02911. | malyl-CoA lyase; Identified by match to protein family HMM PF03328; Belongs to the HpcH/HpaI aldolase family. | 0.606 |
| ABK72876.1 | glyA | MSMEG_0014 | MSMEG_5249 | Formyl transferase; Identified by match to protein family HMM PF00551; match to protein family HMM PF02911. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.952 |
| ABK73940.1 | ABK69826.1 | MSMEG_2072 | MSMEG_5905 | 3-hydroxy-3-methylglutaryl-CoA lyase; Identified by match to protein family HMM PF00682. | Hypothetical protein; Identified by Glimmer2; putative. | 0.753 |
| ABK73940.1 | ABK72516.1 | MSMEG_2072 | MSMEG_6642 | 3-hydroxy-3-methylglutaryl-CoA lyase; Identified by match to protein family HMM PF00682. | Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family. | 0.409 |
| ABK73940.1 | ABK75830.1 | MSMEG_2072 | MSMEG_6644 | 3-hydroxy-3-methylglutaryl-CoA lyase; Identified by match to protein family HMM PF00682. | malyl-CoA lyase; Identified by match to protein family HMM PF03328; Belongs to the HpcH/HpaI aldolase family. | 0.825 |
| ABK75575.1 | ABK72516.1 | MSMEG_6641 | MSMEG_6642 | Nitrilotriacetate monooxygenase component A. | Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family. | 0.785 |
| ABK75575.1 | ABK75830.1 | MSMEG_6641 | MSMEG_6644 | Nitrilotriacetate monooxygenase component A. | malyl-CoA lyase; Identified by match to protein family HMM PF03328; Belongs to the HpcH/HpaI aldolase family. | 0.733 |
| ABK75830.1 | ABK69826.1 | MSMEG_6644 | MSMEG_5905 | malyl-CoA lyase; Identified by match to protein family HMM PF03328; Belongs to the HpcH/HpaI aldolase family. | Hypothetical protein; Identified by Glimmer2; putative. | 0.585 |
| ABK75830.1 | ABK72354.1 | MSMEG_6644 | MSMEG_5191 | malyl-CoA lyase; Identified by match to protein family HMM PF03328; Belongs to the HpcH/HpaI aldolase family. | Siderophore binding protein; Identified by match to protein family HMM PF00132. | 0.586 |
| ABK75830.1 | ABK72516.1 | MSMEG_6644 | MSMEG_6642 | malyl-CoA lyase; Identified by match to protein family HMM PF03328; Belongs to the HpcH/HpaI aldolase family. | Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family. | 0.767 |
| ABK75830.1 | ABK72876.1 | MSMEG_6644 | MSMEG_0014 | malyl-CoA lyase; Identified by match to protein family HMM PF03328; Belongs to the HpcH/HpaI aldolase family. | Formyl transferase; Identified by match to protein family HMM PF00551; match to protein family HMM PF02911. | 0.606 |
| ABK75830.1 | ABK73940.1 | MSMEG_6644 | MSMEG_2072 | malyl-CoA lyase; Identified by match to protein family HMM PF03328; Belongs to the HpcH/HpaI aldolase family. | 3-hydroxy-3-methylglutaryl-CoA lyase; Identified by match to protein family HMM PF00682. | 0.825 |
| ABK75830.1 | ABK75575.1 | MSMEG_6644 | MSMEG_6641 | malyl-CoA lyase; Identified by match to protein family HMM PF03328; Belongs to the HpcH/HpaI aldolase family. | Nitrilotriacetate monooxygenase component A. | 0.733 |
| ABK75830.1 | glyA | MSMEG_6644 | MSMEG_5249 | malyl-CoA lyase; Identified by match to protein family HMM PF03328; Belongs to the HpcH/HpaI aldolase family. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.558 |
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