ABK76214.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK76214.1

Hypothetical protein; Identified by Glimmer2; putative. (134 aa)

Predicted Functional Partners:

ABK74154.1

0.572

ABK70871.1

0.476

ABK75021.1

0.400

ABK69732.1

0.400

ABK71605.1

0.400

ABK74258.1

0.400

ABK75399.1

0.400

ABK72745.1

0.400

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK69732.1	ABK70871.1	MSMEG_6690	MSMEG_6695	Glutamine amidotransferase class-I; Identified by match to protein family HMM PF00117; match to protein family HMM PF07722.	Cytochrome P450; Identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family.	0.684
ABK69732.1	ABK71605.1	MSMEG_6690	MSMEG_6691	Glutamine amidotransferase class-I; Identified by match to protein family HMM PF00117; match to protein family HMM PF07722.	Glutamine amidotransferase; Identified by match to protein family HMM PF00117; match to protein family HMM PF07722.	0.826
ABK69732.1	ABK72745.1	MSMEG_6690	MSMEG_6694	Glutamine amidotransferase class-I; Identified by match to protein family HMM PF00117; match to protein family HMM PF07722.	Conserved domain protein.	0.781
ABK69732.1	ABK74258.1	MSMEG_6690	MSMEG_6692	Glutamine amidotransferase class-I; Identified by match to protein family HMM PF00117; match to protein family HMM PF07722.	Putative glutamine-binding periplasmic protein; Identified by match to protein family HMM PF00497.	0.819
ABK69732.1	ABK75021.1	MSMEG_6690	MSMEG_6688	Glutamine amidotransferase class-I; Identified by match to protein family HMM PF00117; match to protein family HMM PF07722.	Identified by match to protein family HMM PF07905.	0.773
ABK69732.1	ABK75399.1	MSMEG_6690	MSMEG_6693	Glutamine amidotransferase class-I; Identified by match to protein family HMM PF00117; match to protein family HMM PF07722.	Glutamine synthetase III; Identified by match to protein family HMM PF00120; Belongs to the glutamine synthetase family.	0.867
ABK69732.1	ABK76214.1	MSMEG_6690	MSMEG_6696	Glutamine amidotransferase class-I; Identified by match to protein family HMM PF00117; match to protein family HMM PF07722.	Hypothetical protein; Identified by Glimmer2; putative.	0.400
ABK70871.1	ABK69732.1	MSMEG_6695	MSMEG_6690	Cytochrome P450; Identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family.	Glutamine amidotransferase class-I; Identified by match to protein family HMM PF00117; match to protein family HMM PF07722.	0.684
ABK70871.1	ABK71605.1	MSMEG_6695	MSMEG_6691	Cytochrome P450; Identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family.	Glutamine amidotransferase; Identified by match to protein family HMM PF00117; match to protein family HMM PF07722.	0.686
ABK70871.1	ABK72745.1	MSMEG_6695	MSMEG_6694	Cytochrome P450; Identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family.	Conserved domain protein.	0.722
ABK70871.1	ABK74258.1	MSMEG_6695	MSMEG_6692	Cytochrome P450; Identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family.	Putative glutamine-binding periplasmic protein; Identified by match to protein family HMM PF00497.	0.780
ABK70871.1	ABK75021.1	MSMEG_6695	MSMEG_6688	Cytochrome P450; Identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family.	Identified by match to protein family HMM PF07905.	0.653
ABK70871.1	ABK75399.1	MSMEG_6695	MSMEG_6693	Cytochrome P450; Identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family.	Glutamine synthetase III; Identified by match to protein family HMM PF00120; Belongs to the glutamine synthetase family.	0.774
ABK70871.1	ABK76214.1	MSMEG_6695	MSMEG_6696	Cytochrome P450; Identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family.	Hypothetical protein; Identified by Glimmer2; putative.	0.476
ABK71605.1	ABK69732.1	MSMEG_6691	MSMEG_6690	Glutamine amidotransferase; Identified by match to protein family HMM PF00117; match to protein family HMM PF07722.	Glutamine amidotransferase class-I; Identified by match to protein family HMM PF00117; match to protein family HMM PF07722.	0.826
ABK71605.1	ABK70871.1	MSMEG_6691	MSMEG_6695	Glutamine amidotransferase; Identified by match to protein family HMM PF00117; match to protein family HMM PF07722.	Cytochrome P450; Identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family.	0.686
ABK71605.1	ABK72745.1	MSMEG_6691	MSMEG_6694	Glutamine amidotransferase; Identified by match to protein family HMM PF00117; match to protein family HMM PF07722.	Conserved domain protein.	0.783
ABK71605.1	ABK74258.1	MSMEG_6691	MSMEG_6692	Glutamine amidotransferase; Identified by match to protein family HMM PF00117; match to protein family HMM PF07722.	Putative glutamine-binding periplasmic protein; Identified by match to protein family HMM PF00497.	0.817
ABK71605.1	ABK75021.1	MSMEG_6691	MSMEG_6688	Glutamine amidotransferase; Identified by match to protein family HMM PF00117; match to protein family HMM PF07722.	Identified by match to protein family HMM PF07905.	0.777
ABK71605.1	ABK75399.1	MSMEG_6691	MSMEG_6693	Glutamine amidotransferase; Identified by match to protein family HMM PF00117; match to protein family HMM PF07722.	Glutamine synthetase III; Identified by match to protein family HMM PF00120; Belongs to the glutamine synthetase family.	0.866