Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK69712.1 | ABK69853.1 | MSMEG_6740 | MSMEG_6739 | 1-aminocyclopropane-1-carboxylate deaminase; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01274. | Hypothetical protein; Identified by Glimmer2; putative. | 0.450 |
| ABK69712.1 | ABK70730.1 | MSMEG_6740 | MSMEG_2467 | 1-aminocyclopropane-1-carboxylate deaminase; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01274. | Transketolase, central region; Identified by match to protein family HMM PF00676; match to protein family HMM PF02779; match to protein family HMM PF02780. | 0.803 |
| ABK69712.1 | ABK74143.1 | MSMEG_6740 | MSMEG_5219 | 1-aminocyclopropane-1-carboxylate deaminase; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01274. | Riboflavin biosynthesis protein RibD C- domain protein; Identified by match to protein family HMM PF01872. | 0.624 |
| ABK69712.1 | ABK74780.1 | MSMEG_6740 | MSMEG_6738 | 1-aminocyclopropane-1-carboxylate deaminase; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01274. | Probable transcriptional regulator YdhC; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729. | 0.558 |
| ABK69712.1 | ABK75430.1 | MSMEG_6740 | MSMEG_0308 | 1-aminocyclopropane-1-carboxylate deaminase; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01274. | Dihydrofolate reductase. | 0.612 |
| ABK69712.1 | argH | MSMEG_6740 | MSMEG_3769 | 1-aminocyclopropane-1-carboxylate deaminase; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01274. | Argininosuccinate lyase; Identified by match to protein family HMM PF00206; match to protein family HMM TIGR00838. | 0.470 |
| ABK69712.1 | aroA | MSMEG_6740 | MSMEG_1890 | 1-aminocyclopropane-1-carboxylate deaminase; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01274. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.442 |
| ABK69712.1 | egtB | MSMEG_6740 | MSMEG_6249 | 1-aminocyclopropane-1-carboxylate deaminase; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01274. | Conserved hypothetical protein; Catalyzes the oxidative sulfurization of hercynine (N- alpha,N-alpha,N-alpha-trimethyl-L-histidine) into hercynyl-gamma-L- glutamyl-L-cysteine sulfoxide, a step in the biosynthesis pathway of ergothioneine. Cannot use the alternative thiols cysteine, N- acetylcysteine, or glutathione instead of gamma-glutamylcysteine as substrates, and histidine is a poor sulfur acceptor substrate compared to hercynine; Belongs to the EgtB family. | 0.456 |
| ABK69712.1 | ilvA | MSMEG_6740 | MSMEG_3183 | 1-aminocyclopropane-1-carboxylate deaminase; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01274. | Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.837 |
| ABK69712.1 | thrC | MSMEG_6740 | MSMEG_4956 | 1-aminocyclopropane-1-carboxylate deaminase; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01274. | Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine. | 0.709 |
| ABK69853.1 | ABK69712.1 | MSMEG_6739 | MSMEG_6740 | Hypothetical protein; Identified by Glimmer2; putative. | 1-aminocyclopropane-1-carboxylate deaminase; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01274. | 0.450 |
| ABK69853.1 | ABK74780.1 | MSMEG_6739 | MSMEG_6738 | Hypothetical protein; Identified by Glimmer2; putative. | Probable transcriptional regulator YdhC; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729. | 0.525 |
| ABK70730.1 | ABK69712.1 | MSMEG_2467 | MSMEG_6740 | Transketolase, central region; Identified by match to protein family HMM PF00676; match to protein family HMM PF02779; match to protein family HMM PF02780. | 1-aminocyclopropane-1-carboxylate deaminase; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01274. | 0.803 |
| ABK70730.1 | ilvA | MSMEG_2467 | MSMEG_3183 | Transketolase, central region; Identified by match to protein family HMM PF00676; match to protein family HMM PF02779; match to protein family HMM PF02780. | Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.867 |
| ABK74143.1 | ABK69712.1 | MSMEG_5219 | MSMEG_6740 | Riboflavin biosynthesis protein RibD C- domain protein; Identified by match to protein family HMM PF01872. | 1-aminocyclopropane-1-carboxylate deaminase; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01274. | 0.624 |
| ABK74143.1 | ilvA | MSMEG_5219 | MSMEG_3183 | Riboflavin biosynthesis protein RibD C- domain protein; Identified by match to protein family HMM PF01872. | Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.548 |
| ABK74780.1 | ABK69712.1 | MSMEG_6738 | MSMEG_6740 | Probable transcriptional regulator YdhC; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729. | 1-aminocyclopropane-1-carboxylate deaminase; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01274. | 0.558 |
| ABK74780.1 | ABK69853.1 | MSMEG_6738 | MSMEG_6739 | Probable transcriptional regulator YdhC; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729. | Hypothetical protein; Identified by Glimmer2; putative. | 0.525 |
| ABK75430.1 | ABK69712.1 | MSMEG_0308 | MSMEG_6740 | Dihydrofolate reductase. | 1-aminocyclopropane-1-carboxylate deaminase; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01274. | 0.612 |
| ABK75430.1 | ilvA | MSMEG_0308 | MSMEG_3183 | Dihydrofolate reductase. | Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.551 |
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