ABK73205.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK73205.1

Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family. (395 aa)

Predicted Functional Partners:

ABK74938.1

0.784

ABK69729.1

0.703

ABK72546.1

0.530

ABK70103.1

0.500

ABK72666.1

0.498

ABK73095.1

0.488

ABK75596.1

0.403

ABK75292.1

0.401

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK69729.1	ABK72546.1	MSMEG_6775	MSMEG_6776	Major facilitator superfamily protein transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	Transcriptional regulator, LysR family protein; Identified by similarity to SP:P32064; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	0.612
ABK69729.1	ABK72666.1	MSMEG_6775	MSMEG_6772	Major facilitator superfamily protein transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	Homoserine O-acetyltransferase; Identified by match to protein family HMM PF00561; Belongs to the AB hydrolase superfamily. MetX family.	0.458
ABK69729.1	ABK73095.1	MSMEG_6775	MSMEG_6777	Major facilitator superfamily protein transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	Probable enoyl-CoA hydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	0.499
ABK69729.1	ABK73205.1	MSMEG_6775	MSMEG_6773	Major facilitator superfamily protein transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	0.703
ABK69729.1	ABK74938.1	MSMEG_6775	MSMEG_6774	Major facilitator superfamily protein transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	0.714
ABK70103.1	ABK73095.1	MSMEG_4757	MSMEG_6777	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Probable enoyl-CoA hydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	0.742
ABK70103.1	ABK73205.1	MSMEG_4757	MSMEG_6773	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	0.500
ABK70103.1	ABK74938.1	MSMEG_4757	MSMEG_6774	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	0.742
ABK72546.1	ABK69729.1	MSMEG_6776	MSMEG_6775	Transcriptional regulator, LysR family protein; Identified by similarity to SP:P32064; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	Major facilitator superfamily protein transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	0.612
ABK72546.1	ABK73095.1	MSMEG_6776	MSMEG_6777	Transcriptional regulator, LysR family protein; Identified by similarity to SP:P32064; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	Probable enoyl-CoA hydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	0.656
ABK72546.1	ABK73205.1	MSMEG_6776	MSMEG_6773	Transcriptional regulator, LysR family protein; Identified by similarity to SP:P32064; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	0.530
ABK72546.1	ABK74938.1	MSMEG_6776	MSMEG_6774	Transcriptional regulator, LysR family protein; Identified by similarity to SP:P32064; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	0.550
ABK72666.1	ABK69729.1	MSMEG_6772	MSMEG_6775	Homoserine O-acetyltransferase; Identified by match to protein family HMM PF00561; Belongs to the AB hydrolase superfamily. MetX family.	Major facilitator superfamily protein transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	0.458
ABK72666.1	ABK73205.1	MSMEG_6772	MSMEG_6773	Homoserine O-acetyltransferase; Identified by match to protein family HMM PF00561; Belongs to the AB hydrolase superfamily. MetX family.	Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	0.498
ABK72666.1	ABK74938.1	MSMEG_6772	MSMEG_6774	Homoserine O-acetyltransferase; Identified by match to protein family HMM PF00561; Belongs to the AB hydrolase superfamily. MetX family.	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	0.492
ABK73095.1	ABK69729.1	MSMEG_6777	MSMEG_6775	Probable enoyl-CoA hydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	Major facilitator superfamily protein transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	0.499
ABK73095.1	ABK70103.1	MSMEG_6777	MSMEG_4757	Probable enoyl-CoA hydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	0.742
ABK73095.1	ABK72546.1	MSMEG_6777	MSMEG_6776	Probable enoyl-CoA hydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	Transcriptional regulator, LysR family protein; Identified by similarity to SP:P32064; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	0.656
ABK73095.1	ABK73205.1	MSMEG_6777	MSMEG_6773	Probable enoyl-CoA hydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	0.488
ABK73095.1	ABK74938.1	MSMEG_6777	MSMEG_6774	Probable enoyl-CoA hydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	0.857

page 1 of 3

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About