Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK70437.1 | ABK73308.1 | MSMEG_6814 | MSMEG_6816 | Helix-turn-helix, Fis-type; Identified by match to protein family HMM PF01047. | Molybdopterin oxidoreductase; Identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.441 |
ABK70437.1 | ABK76052.1 | MSMEG_6814 | MSMEG_6815 | Helix-turn-helix, Fis-type; Identified by match to protein family HMM PF01047. | Identified by match to protein family HMM TIGR01409. | 0.627 |
ABK70437.1 | ABK76131.1 | MSMEG_6814 | MSMEG_6813 | Helix-turn-helix, Fis-type; Identified by match to protein family HMM PF01047. | Amidohydrolase 2; Identified by match to protein family HMM PF04909. | 0.583 |
ABK73308.1 | ABK70437.1 | MSMEG_6816 | MSMEG_6814 | Molybdopterin oxidoreductase; Identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | Helix-turn-helix, Fis-type; Identified by match to protein family HMM PF01047. | 0.441 |
ABK73308.1 | ABK76052.1 | MSMEG_6816 | MSMEG_6815 | Molybdopterin oxidoreductase; Identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | Identified by match to protein family HMM TIGR01409. | 0.543 |
ABK76052.1 | ABK70437.1 | MSMEG_6815 | MSMEG_6814 | Identified by match to protein family HMM TIGR01409. | Helix-turn-helix, Fis-type; Identified by match to protein family HMM PF01047. | 0.627 |
ABK76052.1 | ABK73308.1 | MSMEG_6815 | MSMEG_6816 | Identified by match to protein family HMM TIGR01409. | Molybdopterin oxidoreductase; Identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.543 |
ABK76052.1 | ABK76131.1 | MSMEG_6815 | MSMEG_6813 | Identified by match to protein family HMM TIGR01409. | Amidohydrolase 2; Identified by match to protein family HMM PF04909. | 0.442 |
ABK76131.1 | ABK70437.1 | MSMEG_6813 | MSMEG_6814 | Amidohydrolase 2; Identified by match to protein family HMM PF04909. | Helix-turn-helix, Fis-type; Identified by match to protein family HMM PF01047. | 0.583 |
ABK76131.1 | ABK76052.1 | MSMEG_6813 | MSMEG_6815 | Amidohydrolase 2; Identified by match to protein family HMM PF04909. | Identified by match to protein family HMM TIGR01409. | 0.442 |