STRINGSTRING
ABK74705.1 ABK74705.1 ABK74022.1 ABK74022.1 asnB-2 asnB-2 ABK73626.1 ABK73626.1 aspA aspA asnB asnB ABK73576.1 ABK73576.1 ABK73538.1 ABK73538.1 ABK72398.1 ABK72398.1 hmgA hmgA ABK70003.1 ABK70003.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK74705.12,2-dialkylglycine decarboxylase; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (440 aa)    
Predicted Functional Partners:
ABK74022.1
LysR-family protein transcriptional regulator; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
 
    0.716
asnB-2
Asparagine synthase (glutamine-hydrolyzing); Identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536.
 
  
 0.587
ABK73626.1
Asparate kinase, monofunctional class; Identified by match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00656; match to protein family HMM TIGR00657; Belongs to the aspartokinase family.
    
 0.556
aspA
Aspartate ammonia-lyase; Identified by match to protein family HMM PF00206.
  
 
 0.544
asnB
Asparagine synthase (glutamine-hydrolyzing); Identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536; match to protein family HMM TIGR03104.
  
 
 0.526
ABK73576.1
L-ornithine 5-monooxygenase.
 
  
 0.490
ABK73538.1
Identified by match to protein family HMM PF01042.
 
    0.429
ABK72398.1
Amino acid adenylation; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.
  
  
 0.406
hmgA
Homogentisate 1,2-dioxygenase; Identified by match to protein family HMM PF04209.
   
  
 0.404
ABK70003.1
MbtG protein.
  
  
 0.400
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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