Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK70530.1 | ABK71430.1 | MSMEG_4770 | MSMEG_6906 | Conserved hypothetical protein. | Putative hydrolase; Identified by match to protein family HMM PF00561. | 0.504 |
| ABK70530.1 | ABK72685.1 | MSMEG_4770 | MSMEG_4771 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.947 |
| ABK70530.1 | ABK74651.1 | MSMEG_4770 | MSMEG_6902 | Conserved hypothetical protein. | Putative membrane protein; Identified by match to protein family HMM PF08044. | 0.519 |
| ABK70530.1 | pks | MSMEG_4770 | MSMEG_0408 | Conserved hypothetical protein. | Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801. | 0.689 |
| ABK70530.1 | pks5 | MSMEG_4770 | MSMEG_4727 | Conserved hypothetical protein. | Mycocerosic acid synthase; Polyketide synthase involved in the biosynthesis of 2,4- dimethyl-2-eicosenoic acid, a lipid component of the lipooligosaccharides (LOS) which are not located at the bacterial surface but rather in deeper compartments of the cell envelope of M.smegmatis. | 0.606 |
| ABK70982.1 | ABK71430.1 | MSMEG_6907 | MSMEG_6906 | MmcI protein. | Putative hydrolase; Identified by match to protein family HMM PF00561. | 0.690 |
| ABK70982.1 | ABK72434.1 | MSMEG_6907 | MSMEG_6908 | MmcI protein. | Putative HTH-type transcriptional regulator; Identified by match to protein family HMM PF00392. | 0.595 |
| ABK70982.1 | ABK73510.1 | MSMEG_6907 | MSMEG_6903 | MmcI protein. | Transcriptional regulator, PadR family protein; Identified by match to protein family HMM PF03551. | 0.426 |
| ABK70982.1 | ino1 | MSMEG_6907 | MSMEG_6904 | MmcI protein. | Myo-inositol-1-phosphate synthase; Catalyzes the conversion of glucose 6-phosphate to 1D-myo- inositol 3-phosphate; Belongs to the myo-inositol 1-phosphate synthase family. | 0.531 |
| ABK71430.1 | ABK70530.1 | MSMEG_6906 | MSMEG_4770 | Putative hydrolase; Identified by match to protein family HMM PF00561. | Conserved hypothetical protein. | 0.504 |
| ABK71430.1 | ABK70982.1 | MSMEG_6906 | MSMEG_6907 | Putative hydrolase; Identified by match to protein family HMM PF00561. | MmcI protein. | 0.690 |
| ABK71430.1 | ABK72434.1 | MSMEG_6906 | MSMEG_6908 | Putative hydrolase; Identified by match to protein family HMM PF00561. | Putative HTH-type transcriptional regulator; Identified by match to protein family HMM PF00392. | 0.750 |
| ABK71430.1 | ABK72685.1 | MSMEG_6906 | MSMEG_4771 | Putative hydrolase; Identified by match to protein family HMM PF00561. | Conserved hypothetical protein. | 0.533 |
| ABK71430.1 | ABK73510.1 | MSMEG_6906 | MSMEG_6903 | Putative hydrolase; Identified by match to protein family HMM PF00561. | Transcriptional regulator, PadR family protein; Identified by match to protein family HMM PF03551. | 0.734 |
| ABK71430.1 | ABK74651.1 | MSMEG_6906 | MSMEG_6902 | Putative hydrolase; Identified by match to protein family HMM PF00561. | Putative membrane protein; Identified by match to protein family HMM PF08044. | 0.538 |
| ABK71430.1 | ino1 | MSMEG_6906 | MSMEG_6904 | Putative hydrolase; Identified by match to protein family HMM PF00561. | Myo-inositol-1-phosphate synthase; Catalyzes the conversion of glucose 6-phosphate to 1D-myo- inositol 3-phosphate; Belongs to the myo-inositol 1-phosphate synthase family. | 0.789 |
| ABK71430.1 | pks | MSMEG_6906 | MSMEG_0408 | Putative hydrolase; Identified by match to protein family HMM PF00561. | Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801. | 0.495 |
| ABK71430.1 | pks5 | MSMEG_6906 | MSMEG_4727 | Putative hydrolase; Identified by match to protein family HMM PF00561. | Mycocerosic acid synthase; Polyketide synthase involved in the biosynthesis of 2,4- dimethyl-2-eicosenoic acid, a lipid component of the lipooligosaccharides (LOS) which are not located at the bacterial surface but rather in deeper compartments of the cell envelope of M.smegmatis. | 0.521 |
| ABK71430.1 | rnz-2 | MSMEG_6906 | MSMEG_4568 | Putative hydrolase; Identified by match to protein family HMM PF00561. | Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA. | 0.575 |
| ABK72434.1 | ABK70982.1 | MSMEG_6908 | MSMEG_6907 | Putative HTH-type transcriptional regulator; Identified by match to protein family HMM PF00392. | MmcI protein. | 0.595 |
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