ABK70982.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK70982.1

MmcI protein. (257 aa)

Predicted Functional Partners:

fgd

0.785

ABK71916.1

0.760

ABK73624.1

0.749

ABK74375.1

0.749

ABK73368.1

0.747

ABK74167.1

0.746

ABK75334.1

0.735

ABK75759.1

0.724

ABK74557.1

0.715

ABK72597.1

0.700

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70982.1	ABK71916.1	MSMEG_6907	MSMEG_5998	MmcI protein.	Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	0.760
ABK70982.1	ABK72597.1	MSMEG_6907	MSMEG_5215	MmcI protein.	Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	0.700
ABK70982.1	ABK73368.1	MSMEG_6907	MSMEG_6325	MmcI protein.	Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	0.747
ABK70982.1	ABK73624.1	MSMEG_6907	MSMEG_2850	MmcI protein.	Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	0.749
ABK70982.1	ABK74167.1	MSMEG_6907	MSMEG_3004	MmcI protein.	Conserved hypothetical protein TIGR00026; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	0.746
ABK70982.1	ABK74375.1	MSMEG_6907	MSMEG_5030	MmcI protein.	Conserved hypothetical protein TIGR00026; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	0.749
ABK70982.1	ABK74557.1	MSMEG_6907	MSMEG_3909	MmcI protein.	Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	0.715
ABK70982.1	ABK75334.1	MSMEG_6907	MSMEG_2027	MmcI protein.	Conserved hypothetical protein TIGR00026; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	0.735
ABK70982.1	ABK75759.1	MSMEG_6907	MSMEG_3356	MmcI protein.	Conserved hypothetical protein TIGR00026; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	0.724
ABK70982.1	fgd	MSMEG_6907	MSMEG_0777	MmcI protein.	F420-dependent glucose-6-phosphate dehydrogenase; Catalyzes the coenzyme F420-dependent oxidation of glucose 6- phosphate (G6P) to 6-phosphogluconolactone. Appears to have a role in resistance to oxidative stress, via its consumption of G6P that serves as a source of reducing power to combat oxidative stress in mycobacteria. Cannot use NAD, NADP, FAD or FMN instead of coenzyme F420 as an electron acceptor. Exhibits nearly no activity with D-mannose-6- phosphate or D-fructose-6-phosphate as substrate. Belongs to the F420-dependent glucose-6-phosphate dehydrogenase family.	0.785
ABK71916.1	ABK70982.1	MSMEG_5998	MSMEG_6907	Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	MmcI protein.	0.760
ABK71916.1	ABK72597.1	MSMEG_5998	MSMEG_5215	Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	0.485
ABK71916.1	ABK74375.1	MSMEG_5998	MSMEG_5030	Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	Conserved hypothetical protein TIGR00026; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	0.409
ABK71916.1	ABK74557.1	MSMEG_5998	MSMEG_3909	Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	0.486
ABK71916.1	ABK75759.1	MSMEG_5998	MSMEG_3356	Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	Conserved hypothetical protein TIGR00026; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	0.420
ABK71916.1	fgd	MSMEG_5998	MSMEG_0777	Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	F420-dependent glucose-6-phosphate dehydrogenase; Catalyzes the coenzyme F420-dependent oxidation of glucose 6- phosphate (G6P) to 6-phosphogluconolactone. Appears to have a role in resistance to oxidative stress, via its consumption of G6P that serves as a source of reducing power to combat oxidative stress in mycobacteria. Cannot use NAD, NADP, FAD or FMN instead of coenzyme F420 as an electron acceptor. Exhibits nearly no activity with D-mannose-6- phosphate or D-fructose-6-phosphate as substrate. Belongs to the F420-dependent glucose-6-phosphate dehydrogenase family.	0.987
ABK72597.1	ABK70982.1	MSMEG_5215	MSMEG_6907	Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	MmcI protein.	0.700
ABK72597.1	ABK71916.1	MSMEG_5215	MSMEG_5998	Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	0.485
ABK72597.1	ABK73624.1	MSMEG_5215	MSMEG_2850	Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	0.416
ABK72597.1	ABK74375.1	MSMEG_5215	MSMEG_5030	Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	Conserved hypothetical protein TIGR00026; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	0.456