STRINGSTRING
ABK74759.1 ABK74759.1 nrdE1 nrdE1 ABK70217.1 ABK70217.1 ABK70339.1 ABK70339.1 ABK73002.1 ABK73002.1 ABK72606.1 ABK72606.1 ABK72436.1 ABK72436.1 dnaN dnaN ABK70295.1 ABK70295.1 ABK75039.1 ABK75039.1 ABK69648.1 ABK69648.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
ABK74759.1Conserved hypothetical protein; Identified by match to protein family HMM PF02622; Belongs to the UPF0301 (AlgH) family. (201 aa)    
Predicted Functional Partners:
nrdE1
Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (By similarity); Belongs to the ribonucleoside diphosphate reductase large chain family.
   
 0.962
ABK70217.1
Ribonucleoside-diphosphate reductase, alpha subunit; Identified by match to protein family HMM PF00317; match to protein family HMM PF02867; match to protein family HMM TIGR02506.
   
 0.962
ABK70339.1
Transporter, major facilitator family protein; Identified by match to protein family HMM PF07690.
  
    0.772
ABK73002.1
Conserved hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
  
  
 0.741
ABK72606.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.
   
    0.717
ABK72436.1
Conserved hypothetical protein.
  
 
 0.716
dnaN
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
   
 
 0.691
ABK70295.1
Regulatory protein GntR, HTH; Identified by match to protein family HMM PF00392.
  
    0.683
ABK75039.1
Probable transcriptional regulatory protein; Identified by match to protein family HMM PF00440.
   
    0.681
ABK69648.1
Putative transcriptional regulatory protein; Identified by match to protein family HMM PF00440.
   
    0.679
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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