Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK70570.1 | ABK73535.1 | MSMEG_2436 | MSMEG_6941 | Conserved hypothetical protein; Belongs to the UPF0109 family. | R3H domain-containing protein; Identified by match to protein family HMM PF01424. | 0.967 |
| ABK70570.1 | rpmH | MSMEG_2436 | MSMEG_6946 | Conserved hypothetical protein; Belongs to the UPF0109 family. | Ribosomal protein L34; Identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030; Belongs to the bacterial ribosomal protein bL34 family. | 0.421 |
| ABK71467.1 | ABK73535.1 | MSMEG_6944 | MSMEG_6941 | Conserved hypothetical protein, putative; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | R3H domain-containing protein; Identified by match to protein family HMM PF01424. | 0.924 |
| ABK71467.1 | ABK73674.1 | MSMEG_6944 | MSMEG_6938 | Conserved hypothetical protein, putative; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | ParB-like partition proteins; Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family. | 0.579 |
| ABK71467.1 | ABK74344.1 | MSMEG_6944 | MSMEG_6942 | Conserved hypothetical protein, putative; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Membrane protein OxaA; Identified by match to protein family HMM PF02096. | 0.989 |
| ABK71467.1 | ABK74964.1 | MSMEG_6944 | MSMEG_6939 | Conserved hypothetical protein, putative; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Soj family protein; Identified by match to protein family HMM PF01656. | 0.749 |
| ABK71467.1 | gidB | MSMEG_6944 | MSMEG_6940 | Conserved hypothetical protein, putative; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Methyltransferase GidB; Specifically methylates the N7 position of guanine in position 518 of 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | 0.678 |
| ABK71467.1 | lgt-2 | MSMEG_6944 | MSMEG_3222 | Conserved hypothetical protein, putative; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family. | 0.403 |
| ABK71467.1 | rho | MSMEG_6944 | MSMEG_4954 | Conserved hypothetical protein, putative; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.717 |
| ABK71467.1 | rnpA | MSMEG_6944 | MSMEG_6945 | Conserved hypothetical protein, putative; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.993 |
| ABK71467.1 | rpmH | MSMEG_6944 | MSMEG_6946 | Conserved hypothetical protein, putative; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Ribosomal protein L34; Identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030; Belongs to the bacterial ribosomal protein bL34 family. | 0.870 |
| ABK73535.1 | ABK70570.1 | MSMEG_6941 | MSMEG_2436 | R3H domain-containing protein; Identified by match to protein family HMM PF01424. | Conserved hypothetical protein; Belongs to the UPF0109 family. | 0.967 |
| ABK73535.1 | ABK71467.1 | MSMEG_6941 | MSMEG_6944 | R3H domain-containing protein; Identified by match to protein family HMM PF01424. | Conserved hypothetical protein, putative; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.924 |
| ABK73535.1 | ABK73674.1 | MSMEG_6941 | MSMEG_6938 | R3H domain-containing protein; Identified by match to protein family HMM PF01424. | ParB-like partition proteins; Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family. | 0.775 |
| ABK73535.1 | ABK74344.1 | MSMEG_6941 | MSMEG_6942 | R3H domain-containing protein; Identified by match to protein family HMM PF01424. | Membrane protein OxaA; Identified by match to protein family HMM PF02096. | 0.974 |
| ABK73535.1 | ABK74964.1 | MSMEG_6941 | MSMEG_6939 | R3H domain-containing protein; Identified by match to protein family HMM PF01424. | Soj family protein; Identified by match to protein family HMM PF01656. | 0.812 |
| ABK73535.1 | gidB | MSMEG_6941 | MSMEG_6940 | R3H domain-containing protein; Identified by match to protein family HMM PF01424. | Methyltransferase GidB; Specifically methylates the N7 position of guanine in position 518 of 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | 0.912 |
| ABK73535.1 | lgt-2 | MSMEG_6941 | MSMEG_3222 | R3H domain-containing protein; Identified by match to protein family HMM PF01424. | Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family. | 0.703 |
| ABK73535.1 | rho | MSMEG_6941 | MSMEG_4954 | R3H domain-containing protein; Identified by match to protein family HMM PF01424. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.716 |
| ABK73535.1 | rnpA | MSMEG_6941 | MSMEG_6945 | R3H domain-containing protein; Identified by match to protein family HMM PF01424. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.933 |
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