Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK71467.1 | ABK73535.1 | MSMEG_6944 | MSMEG_6941 | Conserved hypothetical protein, putative; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | R3H domain-containing protein; Identified by match to protein family HMM PF01424. | 0.924 |
| ABK71467.1 | ABK74344.1 | MSMEG_6944 | MSMEG_6942 | Conserved hypothetical protein, putative; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Membrane protein OxaA; Identified by match to protein family HMM PF02096. | 0.989 |
| ABK71467.1 | rnpA | MSMEG_6944 | MSMEG_6945 | Conserved hypothetical protein, putative; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.993 |
| ABK71467.1 | secE | MSMEG_6944 | MSMEG_1344 | Conserved hypothetical protein, putative; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Translocase; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.699 |
| ABK71467.1 | secG | MSMEG_6944 | MSMEG_3087 | Conserved hypothetical protein, putative; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | 0.434 |
| ABK73535.1 | ABK71467.1 | MSMEG_6941 | MSMEG_6944 | R3H domain-containing protein; Identified by match to protein family HMM PF01424. | Conserved hypothetical protein, putative; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.924 |
| ABK73535.1 | ABK74344.1 | MSMEG_6941 | MSMEG_6942 | R3H domain-containing protein; Identified by match to protein family HMM PF01424. | Membrane protein OxaA; Identified by match to protein family HMM PF02096. | 0.974 |
| ABK73535.1 | rnpA | MSMEG_6941 | MSMEG_6945 | R3H domain-containing protein; Identified by match to protein family HMM PF01424. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.933 |
| ABK74344.1 | ABK71467.1 | MSMEG_6942 | MSMEG_6944 | Membrane protein OxaA; Identified by match to protein family HMM PF02096. | Conserved hypothetical protein, putative; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.989 |
| ABK74344.1 | ABK73535.1 | MSMEG_6942 | MSMEG_6941 | Membrane protein OxaA; Identified by match to protein family HMM PF02096. | R3H domain-containing protein; Identified by match to protein family HMM PF01424. | 0.974 |
| ABK74344.1 | ffh | MSMEG_6942 | MSMEG_2430 | Membrane protein OxaA; Identified by match to protein family HMM PF02096. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.962 |
| ABK74344.1 | ftsY | MSMEG_6942 | MSMEG_2424 | Membrane protein OxaA; Identified by match to protein family HMM PF02096. | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.954 |
| ABK74344.1 | rnpA | MSMEG_6942 | MSMEG_6945 | Membrane protein OxaA; Identified by match to protein family HMM PF02096. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.991 |
| ABK74344.1 | secA | MSMEG_6942 | MSMEG_1881 | Membrane protein OxaA; Identified by match to protein family HMM PF02096. | Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. | 0.973 |
| ABK74344.1 | secA2 | MSMEG_6942 | MSMEG_3654 | Membrane protein OxaA; Identified by match to protein family HMM PF02096. | ATPase SecA2; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. | 0.961 |
| ABK74344.1 | secE | MSMEG_6942 | MSMEG_1344 | Membrane protein OxaA; Identified by match to protein family HMM PF02096. | Translocase; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.982 |
| ABK74344.1 | secG | MSMEG_6942 | MSMEG_3087 | Membrane protein OxaA; Identified by match to protein family HMM PF02096. | Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | 0.984 |
| ABK74344.1 | secY | MSMEG_6942 | MSMEG_1483 | Membrane protein OxaA; Identified by match to protein family HMM PF02096. | Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.996 |
| ffh | ABK74344.1 | MSMEG_2430 | MSMEG_6942 | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | Membrane protein OxaA; Identified by match to protein family HMM PF02096. | 0.962 |
| ffh | ftsY | MSMEG_2430 | MSMEG_2424 | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.999 |
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