STRINGSTRING
ACS38086.1 ACS38086.1 ACS38087.1 ACS38087.1 ACS38089.1 ACS38089.1 ACS38088.1 ACS38088.1 ACS41900.1 ACS41900.1 ACS39095.1 ACS39095.1 ACS39677.1 ACS39677.1 phyR phyR rpoC rpoC rpoB rpoB rpoA rpoA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
ACS38086.1RNA polymerase sigma factor; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily. (176 aa)    
Predicted Functional Partners:
ACS38087.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
 
 0.942
ACS38089.1
Cytochrome B561; Function of strongly homologous gene; carrier.
       0.782
ACS38088.1
Putative catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
     
 0.780
ACS41900.1
RNA polymerase sigma factor; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.741
ACS39095.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
 
 0.729
ACS39677.1
Hypothetical protein; No homology to any previously reported sequences; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.589
phyR
PhyR; Key regulator for adaptation to epiphytic life (leaf colonizing) of the bacterium. Positively regulates several genes including katE, sodA, hsp20, dps and gloA. However, it is not known whether this regulation is direct or indirect. Also induces several dehydrogenases.
 
  
 0.534
rpoC
RNA polymerase, beta prime subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.513
rpoB
RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.507
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.476
Your Current Organism:
Methylorubrum extorquens
NCBI taxonomy Id: 272630
Other names: M. extorquens AM1, Methylobacterium extorquens AM1, Methylorubrum extorquens AM1, Pseudomonas sp. AM1
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