STRINGSTRING
regR regR regS regS ACS42120.1 ACS42120.1 rpoN rpoN ACS39772.1 ACS39772.1 ACS39329.1 ACS39329.1 hfq hfq ACS38365.1 ACS38365.1 ACS39792.1 ACS39792.1 ACS42480.1 ACS42480.1 depA depA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurrence
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[Homology]
Score
regRTwo-component transcriptional regulator RegR, Fis family; Function of homologous gene experimentally demonstrated in an other organism; regulator. (200 aa)    
Predicted Functional Partners:
regS
Two component sensor histidine kinase, RegS; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 0.995
ACS42120.1
Putative integral membrane sensor signal transduction histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
 
 
 
 0.706
rpoN
Sigma N (sigma 54) factor of RNA polymerase; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
     
 0.671
ACS39772.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.668
ACS39329.1
Putative two-component transcriptional regulator, winged helix family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
 
 0.617
hfq
Protein hfq, RNA-binding host factor; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.
      
 0.606
ACS38365.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.511
ACS39792.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.506
ACS42480.1
Putative PAS sensor hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
 
 
 0.502
depA
Intracellular PHB depolymerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.496
Your Current Organism:
Methylorubrum extorquens
NCBI taxonomy Id: 272630
Other names: M. extorquens AM1, Methylobacterium extorquens AM1, Methylorubrum extorquens AM1, Pseudomonas sp. AM1
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