Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ACS38477.1 | ACS41952.1 | MexAM1_META1p0536 | MexAM1_META1p4316 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Putative metallo-hydrolase/oxidoreductase, putative exonuclease (Tat pathway signal); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 0.452 |
ACS38477.1 | amn | MexAM1_META1p0536 | MexAM1_META1p0535 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | AMP nucleosidase; Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations. | 0.570 |
ACS38477.1 | pfpI | MexAM1_META1p0536 | MexAM1_META1p0650 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | General stress protein, putative intracellular proteinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. | 0.687 |
ACS41952.1 | ACS38477.1 | MexAM1_META1p4316 | MexAM1_META1p0536 | Putative metallo-hydrolase/oxidoreductase, putative exonuclease (Tat pathway signal); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | 0.452 |
amn | ACS38477.1 | MexAM1_META1p0535 | MexAM1_META1p0536 | AMP nucleosidase; Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations. | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | 0.570 |
pfpI | ACS38477.1 | MexAM1_META1p0650 | MexAM1_META1p0536 | General stress protein, putative intracellular proteinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | 0.687 |