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prk prk cbbF cbbF qscR qscR cbbA cbbA ACS38693.1 ACS38693.1 rpe rpe gapA gapA tkt tkt pgk pgk tkt-2 tkt-2 tpiA tpiA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
prkPhosphoribulokinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (286 aa)    
Predicted Functional Partners:
cbbF
Fructose-1,6-bisphosphatase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.819
qscR
LysR-type regulator of assimilatory C1 metabolism; Function experimentally demonstrated in the studied strain; regulator; Belongs to the LysR transcriptional regulatory family.
 
   
 0.815
cbbA
Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.
 
  
 0.800
ACS38693.1
Aloacid dehalogenase-like hydrolase; Function of strongly homologous gene; enzyme.
 
   
 0.717
rpe
D-ribulose-5-phosphate 3-epimerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the ribulose-phosphate 3-epimerase family.
  
  
 0.681
gapA
Glyceraldehyde-3-phosphate dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.539
tkt
Transketolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the transketolase family.
  
  
 0.478
pgk
Phosphoglycerate kinase; Function of strongly homologous gene; enzyme; Belongs to the phosphoglycerate kinase family.
     
 0.478
tkt-2
Transketolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the transketolase family.
  
  
 0.478
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
      
 0.468
Your Current Organism:
Methylorubrum extorquens
NCBI taxonomy Id: 272630
Other names: M. extorquens AM1, Methylobacterium extorquens AM1, Methylorubrum extorquens AM1, Pseudomonas sp. AM1
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