STRINGSTRING
ACS38782.1 ACS38782.1 ACS39379.1 ACS39379.1 greA greA ACS38781.1 ACS38781.1 ACS40085.1 ACS40085.1 ACS38587.1 ACS38587.1 ACS41792.1 ACS41792.1 waaA waaA ACS39864.1 ACS39864.1 ACS41590.1 ACS41590.1 trxB trxB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS38782.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (366 aa)    
Predicted Functional Partners:
ACS39379.1
Putative glycosyl transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.772
greA
Transcription elongation factor, cleaves 3' nucleotide of paused mRNA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.699
ACS38781.1
Hypothetical protein; No homology to any previously reported sequences.
       0.692
ACS40085.1
Hypothetical protein; No homology to any previously reported sequences.
 
     0.626
ACS38587.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.583
ACS41792.1
Putative transcriptional regulator, TetR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.563
waaA
3-deoxy-D-manno-octulosonic acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
 
     0.552
ACS39864.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.551
ACS41590.1
Putative permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.551
trxB
Thioredoxin reductase, FAD/NAD(P)-binding; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.539
Your Current Organism:
Methylorubrum extorquens
NCBI taxonomy Id: 272630
Other names: M. extorquens AM1, Methylobacterium extorquens AM1, Methylorubrum extorquens AM1, Pseudomonas sp. AM1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.