Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ACS38859.1 | cspA-2 | MexAM1_META1p0963 | MexAM1_META1p0962 | Hypothetical protein; No homology to any previously reported sequences. | Cold shock DNA binding protein CspA; Function of homologous gene experimentally demonstrated in an other organism; factor. | 0.440 |
| cspA-2 | ACS38859.1 | MexAM1_META1p0962 | MexAM1_META1p0963 | Cold shock DNA binding protein CspA; Function of homologous gene experimentally demonstrated in an other organism; factor. | Hypothetical protein; No homology to any previously reported sequences. | 0.440 |
| cspA-2 | gap | MexAM1_META1p0962 | MexAM1_META1p2218 | Cold shock DNA binding protein CspA; Function of homologous gene experimentally demonstrated in an other organism; factor. | Granule-associated 11 kDa protein; Function of homologous gene experimentally demonstrated in an other organism; factor. | 0.661 |
| cspA-2 | groS | MexAM1_META1p0962 | MexAM1_META1p3553 | Cold shock DNA binding protein CspA; Function of homologous gene experimentally demonstrated in an other organism; factor. | 10 kDa chaperonin (protein Cpn10, groES protein); Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. | 0.462 |
| cspA-2 | groS-2 | MexAM1_META1p0962 | MexAM1_META1p5240 | Cold shock DNA binding protein CspA; Function of homologous gene experimentally demonstrated in an other organism; factor. | 10 kDa chaperonin (protein Cpn10, groES protein); Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. | 0.462 |
| cspA-2 | grpE | MexAM1_META1p0962 | MexAM1_META1p0230 | Cold shock DNA binding protein CspA; Function of homologous gene experimentally demonstrated in an other organism; factor. | Putative heat shock protein (HSP-70 COFACTOR), grpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction c [...] | 0.462 |
| cspA-2 | hfq | MexAM1_META1p0962 | MexAM1_META1p3025 | Cold shock DNA binding protein CspA; Function of homologous gene experimentally demonstrated in an other organism; factor. | Protein hfq, RNA-binding host factor; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.722 |
| cspA-2 | rne | MexAM1_META1p0962 | MexAM1_META1p3916 | Cold shock DNA binding protein CspA; Function of homologous gene experimentally demonstrated in an other organism; factor. | Putative ribonuclease E or G; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. | 0.650 |
| cspA-2 | rpmE | MexAM1_META1p0962 | MexAM1_META1p2358 | Cold shock DNA binding protein CspA; Function of homologous gene experimentally demonstrated in an other organism; factor. | 50S ribosomal protein L31; Function of strongly homologous gene; structure; Belongs to the bacterial ribosomal protein bL31 family. | 0.447 |
| cspA-2 | rpsL | MexAM1_META1p0962 | MexAM1_META1p2148 | Cold shock DNA binding protein CspA; Function of homologous gene experimentally demonstrated in an other organism; factor. | 30S ribosomal subunit protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.473 |
| cspA-2 | sodB | MexAM1_META1p0962 | MexAM1_META1p3512 | Cold shock DNA binding protein CspA; Function of homologous gene experimentally demonstrated in an other organism; factor. | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.516 |
| gap | cspA-2 | MexAM1_META1p2218 | MexAM1_META1p0962 | Granule-associated 11 kDa protein; Function of homologous gene experimentally demonstrated in an other organism; factor. | Cold shock DNA binding protein CspA; Function of homologous gene experimentally demonstrated in an other organism; factor. | 0.661 |
| gap | hfq | MexAM1_META1p2218 | MexAM1_META1p3025 | Granule-associated 11 kDa protein; Function of homologous gene experimentally demonstrated in an other organism; factor. | Protein hfq, RNA-binding host factor; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.695 |
| groS | cspA-2 | MexAM1_META1p3553 | MexAM1_META1p0962 | 10 kDa chaperonin (protein Cpn10, groES protein); Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. | Cold shock DNA binding protein CspA; Function of homologous gene experimentally demonstrated in an other organism; factor. | 0.462 |
| groS | grpE | MexAM1_META1p3553 | MexAM1_META1p0230 | 10 kDa chaperonin (protein Cpn10, groES protein); Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. | Putative heat shock protein (HSP-70 COFACTOR), grpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction c [...] | 0.923 |
| groS | sodB | MexAM1_META1p3553 | MexAM1_META1p3512 | 10 kDa chaperonin (protein Cpn10, groES protein); Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.416 |
| groS-2 | cspA-2 | MexAM1_META1p5240 | MexAM1_META1p0962 | 10 kDa chaperonin (protein Cpn10, groES protein); Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. | Cold shock DNA binding protein CspA; Function of homologous gene experimentally demonstrated in an other organism; factor. | 0.462 |
| groS-2 | grpE | MexAM1_META1p5240 | MexAM1_META1p0230 | 10 kDa chaperonin (protein Cpn10, groES protein); Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. | Putative heat shock protein (HSP-70 COFACTOR), grpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction c [...] | 0.924 |
| groS-2 | sodB | MexAM1_META1p5240 | MexAM1_META1p3512 | 10 kDa chaperonin (protein Cpn10, groES protein); Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.416 |
| grpE | cspA-2 | MexAM1_META1p0230 | MexAM1_META1p0962 | Putative heat shock protein (HSP-70 COFACTOR), grpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction c [...] | Cold shock DNA binding protein CspA; Function of homologous gene experimentally demonstrated in an other organism; factor. | 0.462 |
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